| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159901153
Identifier: 159901153
GI number: 159901153
Start: 5929015
End: 5931447
Strand: Reverse
Name: 159901153
Synonym: Haur_4641
Alternate gene names: NA
Gene position: 5931447-5929015 (Counterclockwise)
Preceding gene: 159901154
Following gene: 159901151
Centisome position: 93.46
GC content: 54.05
Gene sequence:
>2433_bases ATGAAATCTTTTTTTCGTCGGCAACGCCCGACATCCCTCCGCGAACGAGGTAAAGGCAAAGTTCGCTGGACAATCTGGGA GTTAACAGCGCTGGTTGTTAGCATCGTTATGATGGCAACCCCTTTGTTAGCTGCGATTAGCAGTGCTATTTTTCCATTTA ATGCTCAGGCGCAAGCCACGATTCGGCCAACGTCAGCAGCAACACCGGTTACGCCGTTACCACCAACCGCCACCCAGACC TATCCGGTGCCAACCGAAACACCGCTTGTCACGCCGTGTCCAACGTTTGAGCCAACCGAAACACCAACCGAAACCGCCAC AACCTATCCTACACCTGGCACACCTGGCACACCGACCGATACGCCAAGTGTCACGGATACGCCAACGACAATTATTACGT CAACCAATACACCAGCTGTGACCGATACGCCGAGCGTCACCGACACCCCAAGTGTGACAGACACGCCGAGCGCACCAACG GCTACGACGATCATCACACCAACTGAAACCAGTGTTGTAAGCCCAACGATACCCCGTGGTGGGATGAGTGGAAGCACGCG TTTGCATCGGCCTTTAGCCCAAACGCCTGATCCATGTGCAACACCACCAACGATTGTCATTCCACCAACCGATACCATTC CACCTGATGAAACACCAACGGGCACAATCACTGGTCCGGTTACACTGACCCCAGCAACGCCAACCATTGATTGTTTGGTT GCAAGTTGTACGCCAGTTCCAACCCTACCAACTGATATTGCCACGGCAACCGAAACCACCTTGCCAGCCGATGAGCCAAT CGCGGTGGGCAAGAGTAGTTCGCGGGCGCTCGTGCAGCCTGGCGAAACATTTAGTTATATCATCACGGTAAGTTTCCAAG ATAATGGCGATGGGCAAACTTCGCGCTCAGTCAGCATTAGCGACCCATTACCAAGCCAGGTAACCTTTATTGCAGTTCAA CAACTTGGCACAGCGACCTGCGTTGGTGGCACAACCGTCAACTGTAATGGGACGGTCAGTGCAGGTAACCCAATTGTGGT CACGATTCAAGTCCAAGTTAATGCCAGCGTGGCATTGGGCACGAATATCGTTAATATCGTTAGTGCCACGGCGGCCAATC GCACGTTGCAAGCAAGCGATACCGTGATTGTGCCTGATACCTTACCAACCAGCACGCTTGGCACAGCTGGCCCAAGCTTC ACGCCAATTGTTGTGACCAATACACCAATTACGCCAATTGTGACCAATACTCCGATTACGCCAATTGGTGTAACCAATAC TCCACCTACCAGCACACCAGTCACACCAATTGGTGCAACCAACACACCTGGTGGCTCAACCAGCATACCTGTTACGACTG GTCCAAGCAATACGCCACGGCCAAACCAGCCGAGCAATACGCCACGGCCAAATCAGCCGAGCAATACGCCACGGCCAAAC CAGCCGAGCAATACGCCACGGCCAAATCAGCCAAGCAACACACCACAGCCGAATCAGCCAAGCAACACACCACGGCCTGA TATTACGCCAGTGCCAGCAACCAATGTGCCTGTTGCCACGGTTGTTCCACCAAGCAACCCAAGCGCAACGCCACGCCCAG GTGTGCCAGTGCCTTCGGCAACTCAGCGCCCAGGCGGTGGTTCAAATCCAAGTGCAACGCCACGGCCAGGCGCACCAGTG CCTTCGGCTACCAATGCACCAGCTGGCAGCCAACCAACCAATGCACCCGCGCCAGCTACAGCAACGCCAACCAATCCAGC TGGCTTCGTCACCGATCCAATCGTGACTGGCTTGCAGTTCCAAAAGAAGAGCGATTGGGGCAGCCGCTTTGCAGGCGAAA GTTTGATTTACACAATCACGATTATCAGCCCAACTAATTCGTTGAATGCTGGTACGATGCGTGATGTCGTGGTGGTTGAT CAATTGCCAAGCAACTTGGAAACCAATGGCCCAATCAAGGTCAGCGACCAAAATGCACGGGTTGAACAACAAGGCAACCA AATTACCGTGCGGGTCGGGGTCTTGCCAGCAGGCCAAACCTTGACAATCATGATTCCAGTCAAGATCAAAGATGGTGTGG CTGCTCAAACGCGGATCGTCAACCAAGCTCAGTTGAATTTCACTGGCTTGGCCCAGCCAATCTATTCGAATATTTCGAGT GTTTTGGTGGTCGGCGAAGCTCCTGCAGTCAGCGCCACAGCAGTTCCTAAGGGCAATGTCGGCGGCGGTGCTGCAACTGC CAACCCAGCAACCGTCACGCCAAATACTGGCATTGGCGGCGGCCAAGGTAGTGGCGATGGCACTGGCGCAACCGATGTTG GGGTTAGCAACCCAGCTACGAATATGGGTATTCCAGCAGCAGGCTTTGTGCTCTTCGCCCTGACGATGTTCGTTCACGTT ATACGGGTTCGCCGCGAAATGACGCGGATCTAA
Upstream 100 bases:
>100_bases TACCGCTTGGGACACCCAGCGGTTGGTAGTTAAGGCTCGGCTGATTGATCAGGCAGCGCTCTCCTCTTAATTGCGGAGGC AATAGATCGAGGGGTTTCGC
Downstream 100 bases:
>100_bases ACGACAATTTCAACCAAACCAAAACCCCGCTCACGTGAGCGGGGTTTTGGTTTTAGCTTATTTAATCAATACTTGGCGAT CATGTTCAAATTGCCAATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MKSFFRRQRPTSLRERGKGKVRWTIWELTALVVSIVMMATPLLAAISSAIFPFNAQAQATIRPTSAATPVTPLPPTATQT YPVPTETPLVTPCPTFEPTETPTETATTYPTPGTPGTPTDTPSVTDTPTTIITSTNTPAVTDTPSVTDTPSVTDTPSAPT ATTIITPTETSVVSPTIPRGGMSGSTRLHRPLAQTPDPCATPPTIVIPPTDTIPPDETPTGTITGPVTLTPATPTIDCLV ASCTPVPTLPTDIATATETTLPADEPIAVGKSSSRALVQPGETFSYIITVSFQDNGDGQTSRSVSISDPLPSQVTFIAVQ QLGTATCVGGTTVNCNGTVSAGNPIVVTIQVQVNASVALGTNIVNIVSATAANRTLQASDTVIVPDTLPTSTLGTAGPSF TPIVVTNTPITPIVTNTPITPIGVTNTPPTSTPVTPIGATNTPGGSTSIPVTTGPSNTPRPNQPSNTPRPNQPSNTPRPN QPSNTPRPNQPSNTPQPNQPSNTPRPDITPVPATNVPVATVVPPSNPSATPRPGVPVPSATQRPGGGSNPSATPRPGAPV PSATNAPAGSQPTNAPAPATATPTNPAGFVTDPIVTGLQFQKKSDWGSRFAGESLIYTITIISPTNSLNAGTMRDVVVVD QLPSNLETNGPIKVSDQNARVEQQGNQITVRVGVLPAGQTLTIMIPVKIKDGVAAQTRIVNQAQLNFTGLAQPIYSNISS VLVVGEAPAVSATAVPKGNVGGGAATANPATVTPNTGIGGGQGSGDGTGATDVGVSNPATNMGIPAAGFVLFALTMFVHV IRVRREMTRI
Sequences:
>Translated_810_residues MKSFFRRQRPTSLRERGKGKVRWTIWELTALVVSIVMMATPLLAAISSAIFPFNAQAQATIRPTSAATPVTPLPPTATQT YPVPTETPLVTPCPTFEPTETPTETATTYPTPGTPGTPTDTPSVTDTPTTIITSTNTPAVTDTPSVTDTPSVTDTPSAPT ATTIITPTETSVVSPTIPRGGMSGSTRLHRPLAQTPDPCATPPTIVIPPTDTIPPDETPTGTITGPVTLTPATPTIDCLV ASCTPVPTLPTDIATATETTLPADEPIAVGKSSSRALVQPGETFSYIITVSFQDNGDGQTSRSVSISDPLPSQVTFIAVQ QLGTATCVGGTTVNCNGTVSAGNPIVVTIQVQVNASVALGTNIVNIVSATAANRTLQASDTVIVPDTLPTSTLGTAGPSF TPIVVTNTPITPIVTNTPITPIGVTNTPPTSTPVTPIGATNTPGGSTSIPVTTGPSNTPRPNQPSNTPRPNQPSNTPRPN QPSNTPRPNQPSNTPQPNQPSNTPRPDITPVPATNVPVATVVPPSNPSATPRPGVPVPSATQRPGGGSNPSATPRPGAPV PSATNAPAGSQPTNAPAPATATPTNPAGFVTDPIVTGLQFQKKSDWGSRFAGESLIYTITIISPTNSLNAGTMRDVVVVD QLPSNLETNGPIKVSDQNARVEQQGNQITVRVGVLPAGQTLTIMIPVKIKDGVAAQTRIVNQAQLNFTGLAQPIYSNISS VLVVGEAPAVSATAVPKGNVGGGAATANPATVTPNTGIGGGQGSGDGTGATDVGVSNPATNMGIPAAGFVLFALTMFVHV IRVRREMTRI >Mature_810_residues MKSFFRRQRPTSLRERGKGKVRWTIWELTALVVSIVMMATPLLAAISSAIFPFNAQAQATIRPTSAATPVTPLPPTATQT YPVPTETPLVTPCPTFEPTETPTETATTYPTPGTPGTPTDTPSVTDTPTTIITSTNTPAVTDTPSVTDTPSVTDTPSAPT ATTIITPTETSVVSPTIPRGGMSGSTRLHRPLAQTPDPCATPPTIVIPPTDTIPPDETPTGTITGPVTLTPATPTIDCLV ASCTPVPTLPTDIATATETTLPADEPIAVGKSSSRALVQPGETFSYIITVSFQDNGDGQTSRSVSISDPLPSQVTFIAVQ QLGTATCVGGTTVNCNGTVSAGNPIVVTIQVQVNASVALGTNIVNIVSATAANRTLQASDTVIVPDTLPTSTLGTAGPSF TPIVVTNTPITPIVTNTPITPIGVTNTPPTSTPVTPIGATNTPGGSTSIPVTTGPSNTPRPNQPSNTPRPNQPSNTPRPN QPSNTPRPNQPSNTPQPNQPSNTPRPDITPVPATNVPVATVVPPSNPSATPRPGVPVPSATQRPGGGSNPSATPRPGAPV PSATNAPAGSQPTNAPAPATATPTNPAGFVTDPIVTGLQFQKKSDWGSRFAGESLIYTITIISPTNSLNAGTMRDVVVVD QLPSNLETNGPIKVSDQNARVEQQGNQITVRVGVLPAGQTLTIMIPVKIKDGVAAQTRIVNQAQLNFTGLAQPIYSNISS VLVVGEAPAVSATAVPKGNVGGGAATANPATVTPNTGIGGGQGSGDGTGATDVGVSNPATNMGIPAAGFVLFALTMFVHV IRVRREMTRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82647; Mature: 82647
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSFFRRQRPTSLRERGKGKVRWTIWELTALVVSIVMMATPLLAAISSAIFPFNAQAQAT CCHHHHHCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE IRPTSAATPVTPLPPTATQTYPVPTETPLVTPCPTFEPTETPTETATTYPTPGTPGTPTD ECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TPSVTDTPTTIITSTNTPAVTDTPSVTDTPSVTDTPSAPTATTIITPTETSVVSPTIPRG CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC GMSGSTRLHRPLAQTPDPCATPPTIVIPPTDTIPPDETPTGTITGPVTLTPATPTIDCLV CCCCCCHHHCCHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCEEECCCCCCEEEEE ASCTPVPTLPTDIATATETTLPADEPIAVGKSSSRALVQPGETFSYIITVSFQDNGDGQT ECCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCCCEEECCCCCEEEEEEEEEECCCCCCC SRSVSISDPLPSQVTFIAVQQLGTATCVGGTTVNCNGTVSAGNPIVVTIQVQVNASVALG CCEEEECCCCCCCEEEEEEECCCCEEEECCEEEECCEEEECCCCEEEEEEEEECCEEEEC TNIVNIVSATAANRTLQASDTVIVPDTLPTSTLGTAGPSFTPIVVTNTPITPIVTNTPIT CCCEEHHHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCC PIGVTNTPPTSTPVTPIGATNTPGGSTSIPVTTGPSNTPRPNQPSNTPRPNQPSNTPRPN CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC QPSNTPRPNQPSNTPQPNQPSNTPRPDITPVPATNVPVATVVPPSNPSATPRPGVPVPSA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC TQRPGGGSNPSATPRPGAPVPSATNAPAGSQPTNAPAPATATPTNPAGFVTDPIVTGLQF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEE QKKSDWGSRFAGESLIYTITIISPTNSLNAGTMRDVVVVDQLPSNLETNGPIKVSDQNAR ECCCCCCHHHCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCCH VEQQGNQITVRVGVLPAGQTLTIMIPVKIKDGVAAQTRIVNQAQLNFTGLAQPIYSNISS HHHCCCEEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHEECCHHHHHHHHHHCCCE VLVVGEAPAVSATAVPKGNVGGGAATANPATVTPNTGIGGGQGSGDGTGATDVGVSNPAT EEEECCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC NMGIPAAGFVLFALTMFVHVIRVRREMTRI CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSFFRRQRPTSLRERGKGKVRWTIWELTALVVSIVMMATPLLAAISSAIFPFNAQAQAT CCHHHHHCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE IRPTSAATPVTPLPPTATQTYPVPTETPLVTPCPTFEPTETPTETATTYPTPGTPGTPTD ECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TPSVTDTPTTIITSTNTPAVTDTPSVTDTPSVTDTPSAPTATTIITPTETSVVSPTIPRG CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC GMSGSTRLHRPLAQTPDPCATPPTIVIPPTDTIPPDETPTGTITGPVTLTPATPTIDCLV CCCCCCHHHCCHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCEEECCCCCCEEEEE ASCTPVPTLPTDIATATETTLPADEPIAVGKSSSRALVQPGETFSYIITVSFQDNGDGQT ECCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCCCEEECCCCCEEEEEEEEEECCCCCCC SRSVSISDPLPSQVTFIAVQQLGTATCVGGTTVNCNGTVSAGNPIVVTIQVQVNASVALG CCEEEECCCCCCCEEEEEEECCCCEEEECCEEEECCEEEECCCCEEEEEEEEECCEEEEC TNIVNIVSATAANRTLQASDTVIVPDTLPTSTLGTAGPSFTPIVVTNTPITPIVTNTPIT CCCEEHHHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCC PIGVTNTPPTSTPVTPIGATNTPGGSTSIPVTTGPSNTPRPNQPSNTPRPNQPSNTPRPN CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC QPSNTPRPNQPSNTPQPNQPSNTPRPDITPVPATNVPVATVVPPSNPSATPRPGVPVPSA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC TQRPGGGSNPSATPRPGAPVPSATNAPAGSQPTNAPAPATATPTNPAGFVTDPIVTGLQF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEE QKKSDWGSRFAGESLIYTITIISPTNSLNAGTMRDVVVVDQLPSNLETNGPIKVSDQNAR ECCCCCCHHHCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCCH VEQQGNQITVRVGVLPAGQTLTIMIPVKIKDGVAAQTRIVNQAQLNFTGLAQPIYSNISS HHHCCCEEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHEECCHHHHHHHHHHCCCE VLVVGEAPAVSATAVPKGNVGGGAATANPATVTPNTGIGGGQGSGDGTGATDVGVSNPAT EEEECCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC NMGIPAAGFVLFALTMFVHVIRVRREMTRI CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA