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The map label for this gene is hofB [C]

Identifier: 159901125

GI number: 159901125

Start: 5899069

End: 5900472

Strand: Direct

Name: hofB [C]

Synonym: Haur_4613

Alternate gene names: 159901125

Gene position: 5899069-5900472 (Clockwise)

Preceding gene: 159901124

Following gene: 159901126

Centisome position: 92.95

GC content: 50.85

Gene sequence:

>1404_bases
ATGTCGCTCCTAAAGCGTATTGCAGGAAATACGTCCCCATCCTCGGCTTCCGAACCTACAGCAGCAGCACAATCGAGTGC
TGCTGCCACACGCCCTGATGGAGCTATTCCGCGCTCTGCTTCAGTTTCTGCCCAAGATCGCCTACTTGATGTTCGACATC
GTGTCCAGCGACGTTTGACTGAAGAAGTTCGCGATGTTAATAGCACAAGTGAAACCAAAATCCGCCAAACGGTCGAAGAT
CTCTTGAGTGTCGTCCTTGATAGCGAAAATATCGTGTTAAGTCGGGTCGAACGCCAACAATTGGTCGAATCGTTGATGTC
GGATATCGTTGGGCTTGGGCCGCTCGATTCGCTGCTCAAAGATGAGAGCATCTCGGAAATTATGGTCAATGGGCCAAACA
AAATCTATATCGAACAACGTGGGAAGCTGACGCTTTCTGGCACAACATTTATCGATGATGAACACGCGATGCGGGTGTTG
TATCGGATTGTGTCGCCTCTTGGCCGCCGGATCGATGAAAGCTCGCCCATGGTCGATGCCCGGCTTCAAGATGGCTCGCG
GGTTAACGCAGTTATTCGGCCTATTTCATTGATTGGTCCAGTCATCACGATTCGGAAATTCTCCAAAAAGCCGCTTGGCC
CCGAAGATCTGATTCGGTTTGGGGCGATTAGTCGCGAAATGATGGAGTTTCTTTCGGCCAGCGTTCGTGCTCGGATCAAT
GTGGTGGTTTCTGGTGGTACCGGTTCGGGCAAAACGACCTTATTGAATGTGCTTTCCTCATTTATCCCTGAAGATGAACG
TTTGATTACGGTTGAAAACGCTGCCGAACTTCAGCTCCAACAGGATCACGTGATTTCGCTCGAATCGCGGACGGCCAATA
TCGAAGGTAAGGGCGAAATTTCAATCAACGATTTGATTATCAACTGCCTGCGGATGCGACCTGAACGCATTATCGTCGGC
GAATGTCGCGGTGGCGAGACCTTGGCTATGTTGCAAGCAATGAATACTGGCCACGAAGGCTCGATGACCACCCTACACGC
CAATACCCCGCGTGACGCGATTGCCCGGATTGAAACTATGTGTTTGATGTCGGGGATGGATTTGCCGCTCAAGGCTATCC
GTGAACAAGTTGCCTCGGCGATTGAGCTGATTGTGCAACAAGCCCGACTTAAAGATGGTTCGCGGCGGGTTATGGCCATC
TCCGAAGTAACCGGAATGGAAGGCGATTTGGTGGTGCTCCAAGATATTTTCATCTTTGAGCAAACTGGCCTCGATGAACG
TGGTAAGATTGTAGGGTCGCTCCGGCCAACCGGGGTTCGGCCACGCTTCCTTGATCGGTTTGAAGCCTTGAATATTTACC
TGCCACCGAACGTCTTTGGCAATAGTTCAGAGCGCTTTTACTAA

Upstream 100 bases:

>100_bases
TACCAGCCGCGAAGGCGCACGCCCGCAACAACCGAAAAAAGAAGAACCGAAGGGTCTCTTCGCCCGATTGACCAAACGTT
AGACGCATGGAGGGTGGCTT

Downstream 100 bases:

>100_bases
ACGGCATTACTCGCTAGAAAGGAACTAGTGCCATGGCAAATTTACCACCATGGACAATTCCCTTAATCATTGCGTTAGTT
CTCTTTGCTGCTGGGGCGAT

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSLLKRIAGNTSPSSASEPTAAAQSSAAATRPDGAIPRSASVSAQDRLLDVRHRVQRRLTEEVRDVNSTSETKIRQTVED
LLSVVLDSENIVLSRVERQQLVESLMSDIVGLGPLDSLLKDESISEIMVNGPNKIYIEQRGKLTLSGTTFIDDEHAMRVL
YRIVSPLGRRIDESSPMVDARLQDGSRVNAVIRPISLIGPVITIRKFSKKPLGPEDLIRFGAISREMMEFLSASVRARIN
VVVSGGTGSGKTTLLNVLSSFIPEDERLITVENAAELQLQQDHVISLESRTANIEGKGEISINDLIINCLRMRPERIIVG
ECRGGETLAMLQAMNTGHEGSMTTLHANTPRDAIARIETMCLMSGMDLPLKAIREQVASAIELIVQQARLKDGSRRVMAI
SEVTGMEGDLVVLQDIFIFEQTGLDERGKIVGSLRPTGVRPRFLDRFEALNIYLPPNVFGNSSERFY

Sequences:

>Translated_467_residues
MSLLKRIAGNTSPSSASEPTAAAQSSAAATRPDGAIPRSASVSAQDRLLDVRHRVQRRLTEEVRDVNSTSETKIRQTVED
LLSVVLDSENIVLSRVERQQLVESLMSDIVGLGPLDSLLKDESISEIMVNGPNKIYIEQRGKLTLSGTTFIDDEHAMRVL
YRIVSPLGRRIDESSPMVDARLQDGSRVNAVIRPISLIGPVITIRKFSKKPLGPEDLIRFGAISREMMEFLSASVRARIN
VVVSGGTGSGKTTLLNVLSSFIPEDERLITVENAAELQLQQDHVISLESRTANIEGKGEISINDLIINCLRMRPERIIVG
ECRGGETLAMLQAMNTGHEGSMTTLHANTPRDAIARIETMCLMSGMDLPLKAIREQVASAIELIVQQARLKDGSRRVMAI
SEVTGMEGDLVVLQDIFIFEQTGLDERGKIVGSLRPTGVRPRFLDRFEALNIYLPPNVFGNSSERFY
>Mature_466_residues
SLLKRIAGNTSPSSASEPTAAAQSSAAATRPDGAIPRSASVSAQDRLLDVRHRVQRRLTEEVRDVNSTSETKIRQTVEDL
LSVVLDSENIVLSRVERQQLVESLMSDIVGLGPLDSLLKDESISEIMVNGPNKIYIEQRGKLTLSGTTFIDDEHAMRVLY
RIVSPLGRRIDESSPMVDARLQDGSRVNAVIRPISLIGPVITIRKFSKKPLGPEDLIRFGAISREMMEFLSASVRARINV
VVSGGTGSGKTTLLNVLSSFIPEDERLITVENAAELQLQQDHVISLESRTANIEGKGEISINDLIINCLRMRPERIIVGE
CRGGETLAMLQAMNTGHEGSMTTLHANTPRDAIARIETMCLMSGMDLPLKAIREQVASAIELIVQQARLKDGSRRVMAIS
EVTGMEGDLVVLQDIFIFEQTGLDERGKIVGSLRPTGVRPRFLDRFEALNIYLPPNVFGNSSERFY

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 51355; Mature: 51224

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS00227 TUBULIN ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLKRIAGNTSPSSASEPTAAAQSSAAATRPDGAIPRSASVSAQDRLLDVRHRVQRRLT
CCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EEVRDVNSTSETKIRQTVEDLLSVVLDSENIVLSRVERQQLVESLMSDIVGLGPLDSLLK
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC
DESISEIMVNGPNKIYIEQRGKLTLSGTTFIDDEHAMRVLYRIVSPLGRRIDESSPMVDA
CCCHHHHEECCCCEEEEEECCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEE
RLQDGSRVNAVIRPISLIGPVITIRKFSKKPLGPEDLIRFGAISREMMEFLSASVRARIN
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
VVVSGGTGSGKTTLLNVLSSFIPEDERLITVENAAELQLQQDHVISLESRTANIEGKGEI
EEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHEEECCCCEEEEECCCCCCCCCCCE
SINDLIINCLRMRPERIIVGECRGGETLAMLQAMNTGHEGSMTTLHANTPRDAIARIETM
EHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
CLMSGMDLPLKAIREQVASAIELIVQQARLKDGSRRVMAISEVTGMEGDLVVLQDIFIFE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCEEEEHHHHHHH
QTGLDERGKIVGSLRPTGVRPRFLDRFEALNIYLPPNVFGNSSERFY
HCCCCCCCCEEECCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
SLLKRIAGNTSPSSASEPTAAAQSSAAATRPDGAIPRSASVSAQDRLLDVRHRVQRRLT
CHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EEVRDVNSTSETKIRQTVEDLLSVVLDSENIVLSRVERQQLVESLMSDIVGLGPLDSLLK
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC
DESISEIMVNGPNKIYIEQRGKLTLSGTTFIDDEHAMRVLYRIVSPLGRRIDESSPMVDA
CCCHHHHEECCCCEEEEEECCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEE
RLQDGSRVNAVIRPISLIGPVITIRKFSKKPLGPEDLIRFGAISREMMEFLSASVRARIN
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
VVVSGGTGSGKTTLLNVLSSFIPEDERLITVENAAELQLQQDHVISLESRTANIEGKGEI
EEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHEEECCCCEEEEECCCCCCCCCCCE
SINDLIINCLRMRPERIIVGECRGGETLAMLQAMNTGHEGSMTTLHANTPRDAIARIETM
EHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
CLMSGMDLPLKAIREQVASAIELIVQQARLKDGSRRVMAISEVTGMEGDLVVLQDIFIFE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCEEEEHHHHHHH
QTGLDERGKIVGSLRPTGVRPRFLDRFEALNIYLPPNVFGNSSERFY
HCCCCCCCCEEECCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]