| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159901123
Identifier: 159901123
GI number: 159901123
Start: 5896686
End: 5897777
Strand: Direct
Name: 159901123
Synonym: Haur_4611
Alternate gene names: NA
Gene position: 5896686-5897777 (Clockwise)
Preceding gene: 159901122
Following gene: 159901124
Centisome position: 92.91
GC content: 47.89
Gene sequence:
>1092_bases ATGCGCCAAAACCCAGCTCTGGGCATGATTCTTGCCGTCGTTGTTCTCATAGCCGCGCTTGCTGGCGGGTATGTTTATTT AACCAATCAGCAAAAAAGCCAAACAAGTGGAGACCCCTCATTACTTGAGCCAACCAATATGCCGGTTCCGAATGTGCAAA TTTTAGAAGCGGCGACCGATATCGAAGCCAACAAATTGATTACTGGTGCGGATCTTGAGCAATACTTCAACCCGCTTGAA GTTCCTCCTAGCGATGTTACCCCCGACGATGTACTGTACACCGAATTTTATAGCGTGGTTCAAGGGAAGGTAACGACCAC CGACATTCGTGGCGGTGAGCGGATTAAAAAATCAACCTTCCGCAACGCTGGGATTGCCGAAAAGCTGCCAATTCCGGTGG CTGGCGAAGAATCGCTTAAAGCCTACAACATGTTTGTCAGCGATATTGGTGGGATTGTCGCCGAAGGTAATAACATTGAT ATTCTCGGCAGCTATAGCCTTGAACAACCCTATTTACGCTTTACAGGGATTGACAAAGACGGGATAATTACCCTCGTTGA TGAAAAATACCTTGATATTAGCACCCATGTATTAGCCCAAAATGTGCCCGTTTTGAAGGTTGTCGCGCCACCATTAATCT CACCTGATGGCCAACAAACTGGTGCTGCCCCGCCTGCGGCTGAACCAACCATAGAGGTGGTTGTCGATGGCAATCCCGTT GAACCTCAAGCAACTCCTGAGCCAATCTTTACTGAAGGCTCGCAATGGCAAATTGTGGTGGCCTTGACTGCCCAACAAGC CGAGCTGTTAGAATATACAAAAGCTAAAACTGGTAGTAAACTAAATGTAGTCGTGCGGCGTGCTGATGATCAAGATGATC GAATTGCCACAACTGGGGTAACAATGGATCTGTTGATGCGCTTATATGGCGTACCACAAGTCTATGCCCAACCCAACATG ATTGTGAAACTGTTGGATGCTCCTGCACCACCACAGCCTCCACAACAGCCGGCAGTTGTTATTCCATTCCGATTACCAAA CGCACCACAACAACAACCATTGCCAACAGCAGTGCCAACTCAAACGCCTTAA
Upstream 100 bases:
>100_bases GACAGTTGATCAATCGTGTATAATAGCCGCAAACCTCACTATAAAACGGGGGCACGCTTGCCTCACGAGCTCCCAATATT GTTTCGGAGGACGTATTTTT
Downstream 100 bases:
>100_bases TACAACCAAGGAGAATTGCATGGCTGAGTCCGATAAAATTCGCGTACTAATTGTTGACGATATTGCAGATACTCGTGATA ACCTCGAAAAATTATTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Flp Pilus Assembly Protein CpaB
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATDIEANKLITGADLEQYFNPLE VPPSDVTPDDVLYTEFYSVVQGKVTTTDIRGGERIKKSTFRNAGIAEKLPIPVAGEESLKAYNMFVSDIGGIVAEGNNID ILGSYSLEQPYLRFTGIDKDGIITLVDEKYLDISTHVLAQNVPVLKVVAPPLISPDGQQTGAAPPAAEPTIEVVVDGNPV EPQATPEPIFTEGSQWQIVVALTAQQAELLEYTKAKTGSKLNVVVRRADDQDDRIATTGVTMDLLMRLYGVPQVYAQPNM IVKLLDAPAPPQPPQQPAVVIPFRLPNAPQQQPLPTAVPTQTP
Sequences:
>Translated_363_residues MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATDIEANKLITGADLEQYFNPLE VPPSDVTPDDVLYTEFYSVVQGKVTTTDIRGGERIKKSTFRNAGIAEKLPIPVAGEESLKAYNMFVSDIGGIVAEGNNID ILGSYSLEQPYLRFTGIDKDGIITLVDEKYLDISTHVLAQNVPVLKVVAPPLISPDGQQTGAAPPAAEPTIEVVVDGNPV EPQATPEPIFTEGSQWQIVVALTAQQAELLEYTKAKTGSKLNVVVRRADDQDDRIATTGVTMDLLMRLYGVPQVYAQPNM IVKLLDAPAPPQPPQQPAVVIPFRLPNAPQQQPLPTAVPTQTP >Mature_363_residues MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATDIEANKLITGADLEQYFNPLE VPPSDVTPDDVLYTEFYSVVQGKVTTTDIRGGERIKKSTFRNAGIAEKLPIPVAGEESLKAYNMFVSDIGGIVAEGNNID ILGSYSLEQPYLRFTGIDKDGIITLVDEKYLDISTHVLAQNVPVLKVVAPPLISPDGQQTGAAPPAAEPTIEVVVDGNPV EPQATPEPIFTEGSQWQIVVALTAQQAELLEYTKAKTGSKLNVVVRRADDQDDRIATTGVTMDLLMRLYGVPQVYAQPNM IVKLLDAPAPPQPPQQPAVVIPFRLPNAPQQQPLPTAVPTQTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39062; Mature: 39062
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATD CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC IEANKLITGADLEQYFNPLEVPPSDVTPDDVLYTEFYSVVQGKVTTTDIRGGERIKKSTF CCCCEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH RNAGIAEKLPIPVAGEESLKAYNMFVSDIGGIVAEGNNIDILGSYSLEQPYLRFTGIDKD HCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCCEEEECCCCC GIITLVDEKYLDISTHVLAQNVPVLKVVAPPLISPDGQQTGAAPPAAEPTIEVVVDGNPV CEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC EPQATPEPIFTEGSQWQIVVALTAQQAELLEYTKAKTGSKLNVVVRRADDQDDRIATTGV CCCCCCCCCEECCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCC TMDLLMRLYGVPQVYAQPNMIVKLLDAPAPPQPPQQPAVVIPFRLPNAPQQQPLPTAVPT HHHHHHHHHCCCHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC QTP CCC >Mature Secondary Structure MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATD CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC IEANKLITGADLEQYFNPLEVPPSDVTPDDVLYTEFYSVVQGKVTTTDIRGGERIKKSTF CCCCEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH RNAGIAEKLPIPVAGEESLKAYNMFVSDIGGIVAEGNNIDILGSYSLEQPYLRFTGIDKD HCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCCEEEECCCCC GIITLVDEKYLDISTHVLAQNVPVLKVVAPPLISPDGQQTGAAPPAAEPTIEVVVDGNPV CEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC EPQATPEPIFTEGSQWQIVVALTAQQAELLEYTKAKTGSKLNVVVRRADDQDDRIATTGV CCCCCCCCCEECCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCC TMDLLMRLYGVPQVYAQPNMIVKLLDAPAPPQPPQQPAVVIPFRLPNAPQQQPLPTAVPT HHHHHHHHHCCCHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC QTP CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA