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The map label for this gene is cseC [H]

Identifier: 159900942

GI number: 159900942

Start: 5668153

End: 5669739

Strand: Reverse

Name: cseC [H]

Synonym: Haur_4429

Alternate gene names: 159900942

Gene position: 5669739-5668153 (Counterclockwise)

Preceding gene: 159900943

Following gene: 159900941

Centisome position: 89.34

GC content: 51.35

Gene sequence:

>1587_bases
ATGCACGAACGCTGGAATCGCTTGTTGTATAGTCGTTGGTGGTATGCTGCCGCCTTGCTGTATTTGGCAGCTGCCCTGCT
TTGGCCCGCACTCGGCAAACGTTCGGCCCCAATCAGCCGCCTGGTTGAGGTGATTATTTTGCTGGTGTGTGTCGGGCGTT
TTTGGTTGCCTGCAATTCAACGCCCGCATTCAGCCTTGGCTAAAGGCTGGCGGATTTTAGCGGTGCAATGGGGCATGCTG
GCCTTTTATCGTGGTTTAGGTGGCTCGCTAACTAGCATCAAAGGCTTGAGCCAAGTTATGCTACCAATCATTATTTATGT
GCCAACCGTGGTGATGGCTGGGGCATTTTTTGTCAGTTTGCCGTTTAGCCAACGCCGCCGTAGTAGCATTGTGCTCGATT
GGTTTGCCCTCAGCGTTGGCTTGATGATTATCACGACCATCGCGATTCGCCAAGTTGTGCCAAATGTCGCTTGGTATGAT
GGCCTGTTTGTTGGCGCTGATCTTTCGTTACTGTATGCACTTGATCTGATTCGTCAGCAACAGCCTCAACGCTGGCAACA
ACTATTTCGCCAACTGAGCAGCGGCATTTTGGCCTTGAGCTTGGTCGATTTGGCTTGGATTTTCGACCGAAGCAAGCTGG
TTGTCTTGCCGATTGGCGCATTATATTGCGTGGCTTGGCTGATTTTAGCCCACGCTGCGGCGATTCACCCCAACGCTAGC
AGCCCTCGCAGCGATCAACTAACGATCGATACCTTTGCCAAACGCAGCATTCCCTATGTGATTTTGCTTGGTGGCTTAGC
TTTCACAATTGCCACTGGCGAGTTGAATTTTGCCCTGCTGCTACTGCCATTATTTTTGCTACGAATCAGTGTTGAGATGA
GCGAAGCTCAACAACTTTCGCTACGGCTCGAACAAGCGCGACGCGAGGCCACCCACGCCCGCGATGAAGCCGAATTTCTC
CGCGAACTGTTGCGCTCCTCAATTCATGATCTGCGTTCGCCGATCGATGGAGCCACAGGCCTGATCAGTGTGTTGGAATC
ACAGCCACAACGCCCACAATTATGGAACTTGCTGCGGGTACAAATTGAAGATATCGGCCAGCAAATGCACGATCTGTTGG
ATATTGCCCGAGCACAAACCAGGGCCATGCTGCAACAAACTCCGGTTGATTTAGCCGAACTATGTTGCGCTGAAACTGCT
CGTTTAGAGGCCAGCGCCGCCTTTGCCCAAAAAGCCAACAAACCGCAAATTCAACTTAATATTCAAAATCTGCAAGTGGA
CACCAACCAACGCTTGCTTGGTCGGGCGATTTATAATCTCTTGAAAAATAGCCTTGATCATGGCGGCCAGCAGATTCGCT
TAATTGTTGAGCCACATGCTGAGCAGATTAACCTGATTATTCACGACAATGGGGCTGGCTTTCCCCAGCATGTGCTCGAT
TTAGCCCCAAGCAGCAGCGATGGGCGTGGCTATGGCTTTGGTTTACGCGGCGTTTTGGCCAATCTCAGCCTGATTGGAGC
CAGACTTCAGCTCGAAAATCGCCAAGGTGCTTGGGCTTGTATTCAATTGCCCCGCCTATCAGCCTAG

Upstream 100 bases:

>100_bases
GGCATCAATCACTGATGCTCGTTTGGGCGTGAGCAAAAAGCCGTCTTTGCTCACGCTAGGCCCGATTGCCTCAAAGGGCA
GCCTCGCGTACAATCGCCAT

Downstream 100 bases:

>100_bases
CTTTTCAGGAGGATTATCGGTGAGCTATCGTGCATTTGTGGTCGAAGATAGTGAAGTTCATGCCACTTTAGCTGAGCTGT
TGTTGCAAGAAGCAGGCTTC

Product: integral membrane sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MHERWNRLLYSRWWYAAALLYLAAALLWPALGKRSAPISRLVEVIILLVCVGRFWLPAIQRPHSALAKGWRILAVQWGML
AFYRGLGGSLTSIKGLSQVMLPIIIYVPTVVMAGAFFVSLPFSQRRRSSIVLDWFALSVGLMIITTIAIRQVVPNVAWYD
GLFVGADLSLLYALDLIRQQQPQRWQQLFRQLSSGILALSLVDLAWIFDRSKLVVLPIGALYCVAWLILAHAAAIHPNAS
SPRSDQLTIDTFAKRSIPYVILLGGLAFTIATGELNFALLLLPLFLLRISVEMSEAQQLSLRLEQARREATHARDEAEFL
RELLRSSIHDLRSPIDGATGLISVLESQPQRPQLWNLLRVQIEDIGQQMHDLLDIARAQTRAMLQQTPVDLAELCCAETA
RLEASAAFAQKANKPQIQLNIQNLQVDTNQRLLGRAIYNLLKNSLDHGGQQIRLIVEPHAEQINLIIHDNGAGFPQHVLD
LAPSSSDGRGYGFGLRGVLANLSLIGARLQLENRQGAWACIQLPRLSA

Sequences:

>Translated_528_residues
MHERWNRLLYSRWWYAAALLYLAAALLWPALGKRSAPISRLVEVIILLVCVGRFWLPAIQRPHSALAKGWRILAVQWGML
AFYRGLGGSLTSIKGLSQVMLPIIIYVPTVVMAGAFFVSLPFSQRRRSSIVLDWFALSVGLMIITTIAIRQVVPNVAWYD
GLFVGADLSLLYALDLIRQQQPQRWQQLFRQLSSGILALSLVDLAWIFDRSKLVVLPIGALYCVAWLILAHAAAIHPNAS
SPRSDQLTIDTFAKRSIPYVILLGGLAFTIATGELNFALLLLPLFLLRISVEMSEAQQLSLRLEQARREATHARDEAEFL
RELLRSSIHDLRSPIDGATGLISVLESQPQRPQLWNLLRVQIEDIGQQMHDLLDIARAQTRAMLQQTPVDLAELCCAETA
RLEASAAFAQKANKPQIQLNIQNLQVDTNQRLLGRAIYNLLKNSLDHGGQQIRLIVEPHAEQINLIIHDNGAGFPQHVLD
LAPSSSDGRGYGFGLRGVLANLSLIGARLQLENRQGAWACIQLPRLSA
>Mature_528_residues
MHERWNRLLYSRWWYAAALLYLAAALLWPALGKRSAPISRLVEVIILLVCVGRFWLPAIQRPHSALAKGWRILAVQWGML
AFYRGLGGSLTSIKGLSQVMLPIIIYVPTVVMAGAFFVSLPFSQRRRSSIVLDWFALSVGLMIITTIAIRQVVPNVAWYD
GLFVGADLSLLYALDLIRQQQPQRWQQLFRQLSSGILALSLVDLAWIFDRSKLVVLPIGALYCVAWLILAHAAAIHPNAS
SPRSDQLTIDTFAKRSIPYVILLGGLAFTIATGELNFALLLLPLFLLRISVEMSEAQQLSLRLEQARREATHARDEAEFL
RELLRSSIHDLRSPIDGATGLISVLESQPQRPQLWNLLRVQIEDIGQQMHDLLDIARAQTRAMLQQTPVDLAELCCAETA
RLEASAAFAQKANKPQIQLNIQNLQVDTNQRLLGRAIYNLLKNSLDHGGQQIRLIVEPHAEQINLIIHDNGAGFPQHVLD
LAPSSSDGRGYGFGLRGVLANLSLIGARLQLENRQGAWACIQLPRLSA

Specific function: Member of the two-component regulatory system CseB/CseC involved in the stability of the cell envelope, through activation of transcription of RNA polymerase sigma-E factor. CseC functions as a membrane-associated protein kinase that phosphorylates CseB i

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 58865; Mature: 58865

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHERWNRLLYSRWWYAAALLYLAAALLWPALGKRSAPISRLVEVIILLVCVGRFWLPAIQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RPHSALAKGWRILAVQWGMLAFYRGLGGSLTSIKGLSQVMLPIIIYVPTVVMAGAFFVSL
CCHHHHHCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFSQRRRSSIVLDWFALSVGLMIITTIAIRQVVPNVAWYDGLFVGADLSLLYALDLIRQQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEECCHHHHHHHHHHHHHC
QPQRWQQLFRQLSSGILALSLVDLAWIFDRSKLVVLPIGALYCVAWLILAHAAAIHPNAS
CCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCC
SPRSDQLTIDTFAKRSIPYVILLGGLAFTIATGELNFALLLLPLFLLRISVEMSEAQQLS
CCCCCCEEHHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLEQARREATHARDEAEFLRELLRSSIHDLRSPIDGATGLISVLESQPQRPQLWNLLRV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
QIEDIGQQMHDLLDIARAQTRAMLQQTPVDLAELCCAETARLEASAAFAQKANKPQIQLN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
IQNLQVDTNQRLLGRAIYNLLKNSLDHGGQQIRLIVEPHAEQINLIIHDNGAGFPQHVLD
EEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHH
LAPSSSDGRGYGFGLRGVLANLSLIGARLQLENRQGAWACIQLPRLSA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCC
>Mature Secondary Structure
MHERWNRLLYSRWWYAAALLYLAAALLWPALGKRSAPISRLVEVIILLVCVGRFWLPAIQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RPHSALAKGWRILAVQWGMLAFYRGLGGSLTSIKGLSQVMLPIIIYVPTVVMAGAFFVSL
CCHHHHHCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFSQRRRSSIVLDWFALSVGLMIITTIAIRQVVPNVAWYDGLFVGADLSLLYALDLIRQQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEECCHHHHHHHHHHHHHC
QPQRWQQLFRQLSSGILALSLVDLAWIFDRSKLVVLPIGALYCVAWLILAHAAAIHPNAS
CCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCC
SPRSDQLTIDTFAKRSIPYVILLGGLAFTIATGELNFALLLLPLFLLRISVEMSEAQQLS
CCCCCCEEHHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLEQARREATHARDEAEFLRELLRSSIHDLRSPIDGATGLISVLESQPQRPQLWNLLRV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
QIEDIGQQMHDLLDIARAQTRAMLQQTPVDLAELCCAETARLEASAAFAQKANKPQIQLN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
IQNLQVDTNQRLLGRAIYNLLKNSLDHGGQQIRLIVEPHAEQINLIIHDNGAGFPQHVLD
EEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHH
LAPSSSDGRGYGFGLRGVLANLSLIGARLQLENRQGAWACIQLPRLSA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10411727; 12000953 [H]