Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900886

Identifier: 159900886

GI number: 159900886

Start: 5587052

End: 5587897

Strand: Reverse

Name: 159900886

Synonym: Haur_4373

Alternate gene names: NA

Gene position: 5587897-5587052 (Counterclockwise)

Preceding gene: 159900889

Following gene: 159900885

Centisome position: 88.05

GC content: 51.06

Gene sequence:

>846_bases
ATGCCAATTTTGCTGGATCTATGGCTCACGCTGTTGCCAGCTTTAGCGCCCAATCGCTGGCTTGCAAGCATGGGCAGTGT
GATCAACCGTTTTAGCCAAGCCCAAGGCCAACAGCTTTGGTCGCAGGCCAATGAGTTGTTGCAAACCATCGATTTGCGTT
CGAGCGCCGTTGGTACGTATCTCGTGCCCAGTTTGTTCAGCGGCGATGGCACACCCTCGATCTATGCTGGCGCACCATGG
TTGTTCAACGGTTGGCTAACATTATTGTTGGTGCTTGGGCTGAACATTGCTGGTTTAGGGCTAAGTGCGTTGGTCTTGTT
CTGGCTCGGCCAGCAACTCGCTACAACAAAACCAGCATTATCGGCGTTGCCCAAACAACTTTGGGCTTTGACTAAGATGT
GTTTGATTATTGTTGGGCTTGGTTTACTATTTGGCATTCCAGCGTTTGTGGCTGCTAGCTTTTTGCTTTCGGCCAGCGCA
TTTGGGGCACAATTGGTATTGGCAGCGTTTGGCGTGCTGCTGATCGCGCTGTGGCTTTATGCCAGCCTTGCACCAGCAGC
AATCATTATTGGCCAACAATCAGCCTTAGTGGCCCTCTACCAAAGCTATAATCTCGTTCGTCAACAGCCCCGCGAAGCCT
TTCCGCTGATCCTCGCGAGTGGCGTTTTGATCCATGGCACGGCCTTTTTACTGCGGCCATTAGCCAACGATCTGATCAGC
ATTATTGCCGCTAGCGCCCTATTTGGGTTGCTCAGCTGTAGTTTACAAGCAGCAAAATTAGCCTTTTATAGCGAACGTGT
TGGCTCACTTGCCCACCGTTTTCCTGTTGCCCTAACACAAAAGTGA

Upstream 100 bases:

>100_bases
ACGTTTACAACCACAAGCCCAAGAGCCACAACGGCGGAATCTTCCGGAACGTCTAAGCCAAGGATTTCGCGTCGTTCGTC
GAGCACCTTGGGTTATTTTA

Downstream 100 bases:

>100_bases
GGTTCGATTCGATGGCGACAAATTCCAATCAGAGTACATACGATGCCGCCCAGATTCAAATGTTGCGCGGCTTGGAAGCA
GTACGCGAAAACATGGGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MPILLDLWLTLLPALAPNRWLASMGSVINRFSQAQGQQLWSQANELLQTIDLRSSAVGTYLVPSLFSGDGTPSIYAGAPW
LFNGWLTLLLVLGLNIAGLGLSALVLFWLGQQLATTKPALSALPKQLWALTKMCLIIVGLGLLFGIPAFVAASFLLSASA
FGAQLVLAAFGVLLIALWLYASLAPAAIIIGQQSALVALYQSYNLVRQQPREAFPLILASGVLIHGTAFLLRPLANDLIS
IIAASALFGLLSCSLQAAKLAFYSERVGSLAHRFPVALTQK

Sequences:

>Translated_281_residues
MPILLDLWLTLLPALAPNRWLASMGSVINRFSQAQGQQLWSQANELLQTIDLRSSAVGTYLVPSLFSGDGTPSIYAGAPW
LFNGWLTLLLVLGLNIAGLGLSALVLFWLGQQLATTKPALSALPKQLWALTKMCLIIVGLGLLFGIPAFVAASFLLSASA
FGAQLVLAAFGVLLIALWLYASLAPAAIIIGQQSALVALYQSYNLVRQQPREAFPLILASGVLIHGTAFLLRPLANDLIS
IIAASALFGLLSCSLQAAKLAFYSERVGSLAHRFPVALTQK
>Mature_280_residues
PILLDLWLTLLPALAPNRWLASMGSVINRFSQAQGQQLWSQANELLQTIDLRSSAVGTYLVPSLFSGDGTPSIYAGAPWL
FNGWLTLLLVLGLNIAGLGLSALVLFWLGQQLATTKPALSALPKQLWALTKMCLIIVGLGLLFGIPAFVAASFLLSASAF
GAQLVLAAFGVLLIALWLYASLAPAAIIIGQQSALVALYQSYNLVRQQPREAFPLILASGVLIHGTAFLLRPLANDLISI
IAASALFGLLSCSLQAAKLAFYSERVGSLAHRFPVALTQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29924; Mature: 29793

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPILLDLWLTLLPALAPNRWLASMGSVINRFSQAQGQQLWSQANELLQTIDLRSSAVGTY
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVPSLFSGDGTPSIYAGAPWLFNGWLTLLLVLGLNIAGLGLSALVLFWLGQQLATTKPAL
HHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHH
SALPKQLWALTKMCLIIVGLGLLFGIPAFVAASFLLSASAFGAQLVLAAFGVLLIALWLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLAPAAIIIGQQSALVALYQSYNLVRQQPREAFPLILASGVLIHGTAFLLRPLANDLIS
HHHHHHHHEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IIAASALFGLLSCSLQAAKLAFYSERVGSLAHRFPVALTQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
PILLDLWLTLLPALAPNRWLASMGSVINRFSQAQGQQLWSQANELLQTIDLRSSAVGTY
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVPSLFSGDGTPSIYAGAPWLFNGWLTLLLVLGLNIAGLGLSALVLFWLGQQLATTKPAL
HHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHH
SALPKQLWALTKMCLIIVGLGLLFGIPAFVAASFLLSASAFGAQLVLAAFGVLLIALWLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLAPAAIIIGQQSALVALYQSYNLVRQQPREAFPLILASGVLIHGTAFLLRPLANDLIS
HHHHHHHHEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IIAASALFGLLSCSLQAAKLAFYSERVGSLAHRFPVALTQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA