| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159900822
Identifier: 159900822
GI number: 159900822
Start: 5502197
End: 5504134
Strand: Reverse
Name: 159900822
Synonym: Haur_4309
Alternate gene names: NA
Gene position: 5504134-5502197 (Counterclockwise)
Preceding gene: 159900823
Following gene: 159900821
Centisome position: 86.73
GC content: 49.74
Gene sequence:
>1938_bases ATGGTGGCGGCGTTTTCGTGGACTAATTTTTTGCTTGCAGCCAATGACCTAACGCTGGCAGCAATTGTGGTCGTGGGGTT TTCGTTATTTGCCTATATTGCGCTGCACAATTGGCGCAATGGGGTAGCTCGTTCGTTTTGTTTGTTGATTGTGGGGTTGA TGATTGTGCTGGGGGGCGCAATTCTCCAACGTCAAGCGCAAACCGAAGCTACTCGTCATGTGCTTTGGCGCATTCAATGG GCAGGTATTAGCCTTGTGCCTGCGGCCTACTACCATTTTGCCGAATCTCTGCTTCGTAGCACGGGTGATCCACGTATGTG GACGCGAGTGCTCTTGCCTTTATTCTATACATTTAGTGTTGGCTTTTGGCTGGTCGCGCTGACGAGTAACATTTTGGTGA TTGATGTGCCAAGTCAGCCGTATGTTGGCTTTGGCAAAGGGCCATTGTTTTGGTTCTTCATTAGCTATTTCGTCACCGTG TGTTTGCTCGGGGTTTGGTGTATTCGCCAAGCCCATCGGCGCTCGATTACTCCGGCCAATCGGCGGCGCTTATGGTATTT AAGTACTTCTTTTTTAGCCCCATTTCTGGGTGTATTTCCCTATTTGATTATCGCCGCCAATACTAAGGGCGTGCCATCCT GGCTTTCGTTGATGCTACTAGGCGCAAGCACCACCGGCGTGGGAGTGATGATGACCCTCATGACCTATAGTGTGGCTTTC CATGGGGTGATTGTGCCAGATCGTTTGGTTAAGTATAATTTCTTACGTTATGTATTATATGGGCCATTCGTTGGCGTAGC CTTGATTATTTGTTTGCAATTGGTTGAGCCGATCAGTGCCGCCACCGGCTTGCCGCGTGCAACGATCACGATTTTTGGGG TAATGTTGATGACGGTGATGATGCCAATTTTTATTGGGCGAATTCGGCCAACCGTCGATACCTTGATTTATCGCCAAGAT AGTGATGAAGTGCGTTGGATGCGCCGCTTCGAGGAGCGAGCTTTCACCCGCCAAGATTTACGCCAATTGCTCGAAAATAC CTTGGTGGCGGTTTGTGGCTCGTTGCGGGTTGAATCAGGCTTTGTGCTGGCTCCCAATGACGAGCATTTTACCGTTCAAG CATCGTGTGGCCCGCGCCGCACCATCAAGCAATTTTTGAATGTTCATGATATCAACGAGCTATTGCAAAATCTGCCCCAC TTGGCCTTCAGCAACGATCGCATTCCCGAAGTTGAGGATTTTAGCATTCGCGATGGCTTTTGTTTGTTGCCATTGTACAA TAGCCAGCAGGAATTATTGGGCGCAATTGGGATTGGTTGTCGGCCAGAACAACTGACCATTCCCACTCGCCAGTTAATTG CAACCTTGGCGCATCAGATGGAATTGGCGCTAACCCATATGCAATTGCAGCAAAACCTATTTAGCTCGTTGCGTGGGCTA GCCCCCCAAAGCGCTTCGCTGTTACAATTAACCAGTGAAATTGAAACGCCAGTCACCGAAAAAAACGATGCGCTGGCTGA TGTGGCCTTGCACCCTGAGTTTCCACAGTTGGTCAAGGATGCACTTTCACATTATTGGGGTGGCCCAAAACTGAGCGATA GCCCATTGCTCGATTTGCGCACAGTGCGCCAATTGCTCGATACCCAAGGTGGCAGCCCAACGCGGGCTTTGCAAGGCGTG TTACGCCAAGCGATCGAAAACATTCGGCCTGAAGATCAACTTGATCCAACGGCTCCCGAATGGATGATTTACAATATTTT AGAATTACGCTTTCTCAAAGGCTTACGGATACGCGAGATTATAGATAAGCTCGCAATGAGCGAATCGGATTTTTATCGAA AACAACGGGTGGCGGTGGAAGAAGTGGCCCGTCAGTTGGCGCTGATGGAAGACCAAGGCGATCGCCCTTCCGGCTCGGTT GAGCGACAACGTCCCTAA
Upstream 100 bases:
>100_bases CCCTTTAGAATCGCCTAGACGCGCCATGCTATAATTCAGGTGGCGGCACTGCTGCGGCCACATTCGCAGACTACATTCTC AATCGCTAGGAACTTTAGGT
Downstream 100 bases:
>100_bases GCGCGAGGCATCTGGAGATACCTGTATGGATAGCTACGAACGCCGTTCTCGTTTTGTTCACCGCTTTGCAACACCCCTGA CCACGCTGAATGCGGGGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 645; Mature: 645
Protein sequence:
>645_residues MVAAFSWTNFLLAANDLTLAAIVVVGFSLFAYIALHNWRNGVARSFCLLIVGLMIVLGGAILQRQAQTEATRHVLWRIQW AGISLVPAAYYHFAESLLRSTGDPRMWTRVLLPLFYTFSVGFWLVALTSNILVIDVPSQPYVGFGKGPLFWFFISYFVTV CLLGVWCIRQAHRRSITPANRRRLWYLSTSFLAPFLGVFPYLIIAANTKGVPSWLSLMLLGASTTGVGVMMTLMTYSVAF HGVIVPDRLVKYNFLRYVLYGPFVGVALIICLQLVEPISAATGLPRATITIFGVMLMTVMMPIFIGRIRPTVDTLIYRQD SDEVRWMRRFEERAFTRQDLRQLLENTLVAVCGSLRVESGFVLAPNDEHFTVQASCGPRRTIKQFLNVHDINELLQNLPH LAFSNDRIPEVEDFSIRDGFCLLPLYNSQQELLGAIGIGCRPEQLTIPTRQLIATLAHQMELALTHMQLQQNLFSSLRGL APQSASLLQLTSEIETPVTEKNDALADVALHPEFPQLVKDALSHYWGGPKLSDSPLLDLRTVRQLLDTQGGSPTRALQGV LRQAIENIRPEDQLDPTAPEWMIYNILELRFLKGLRIREIIDKLAMSESDFYRKQRVAVEEVARQLALMEDQGDRPSGSV ERQRP
Sequences:
>Translated_645_residues MVAAFSWTNFLLAANDLTLAAIVVVGFSLFAYIALHNWRNGVARSFCLLIVGLMIVLGGAILQRQAQTEATRHVLWRIQW AGISLVPAAYYHFAESLLRSTGDPRMWTRVLLPLFYTFSVGFWLVALTSNILVIDVPSQPYVGFGKGPLFWFFISYFVTV CLLGVWCIRQAHRRSITPANRRRLWYLSTSFLAPFLGVFPYLIIAANTKGVPSWLSLMLLGASTTGVGVMMTLMTYSVAF HGVIVPDRLVKYNFLRYVLYGPFVGVALIICLQLVEPISAATGLPRATITIFGVMLMTVMMPIFIGRIRPTVDTLIYRQD SDEVRWMRRFEERAFTRQDLRQLLENTLVAVCGSLRVESGFVLAPNDEHFTVQASCGPRRTIKQFLNVHDINELLQNLPH LAFSNDRIPEVEDFSIRDGFCLLPLYNSQQELLGAIGIGCRPEQLTIPTRQLIATLAHQMELALTHMQLQQNLFSSLRGL APQSASLLQLTSEIETPVTEKNDALADVALHPEFPQLVKDALSHYWGGPKLSDSPLLDLRTVRQLLDTQGGSPTRALQGV LRQAIENIRPEDQLDPTAPEWMIYNILELRFLKGLRIREIIDKLAMSESDFYRKQRVAVEEVARQLALMEDQGDRPSGSV ERQRP >Mature_645_residues MVAAFSWTNFLLAANDLTLAAIVVVGFSLFAYIALHNWRNGVARSFCLLIVGLMIVLGGAILQRQAQTEATRHVLWRIQW AGISLVPAAYYHFAESLLRSTGDPRMWTRVLLPLFYTFSVGFWLVALTSNILVIDVPSQPYVGFGKGPLFWFFISYFVTV CLLGVWCIRQAHRRSITPANRRRLWYLSTSFLAPFLGVFPYLIIAANTKGVPSWLSLMLLGASTTGVGVMMTLMTYSVAF HGVIVPDRLVKYNFLRYVLYGPFVGVALIICLQLVEPISAATGLPRATITIFGVMLMTVMMPIFIGRIRPTVDTLIYRQD SDEVRWMRRFEERAFTRQDLRQLLENTLVAVCGSLRVESGFVLAPNDEHFTVQASCGPRRTIKQFLNVHDINELLQNLPH LAFSNDRIPEVEDFSIRDGFCLLPLYNSQQELLGAIGIGCRPEQLTIPTRQLIATLAHQMELALTHMQLQQNLFSSLRGL APQSASLLQLTSEIETPVTEKNDALADVALHPEFPQLVKDALSHYWGGPKLSDSPLLDLRTVRQLLDTQGGSPTRALQGV LRQAIENIRPEDQLDPTAPEWMIYNILELRFLKGLRIREIIDKLAMSESDFYRKQRVAVEEVARQLALMEDQGDRPSGSV ERQRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72724; Mature: 72724
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAAFSWTNFLLAANDLTLAAIVVVGFSLFAYIALHNWRNGVARSFCLLIVGLMIVLGGA CCEEEEHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILQRQAQTEATRHVLWRIQWAGISLVPAAYYHFAESLLRSTGDPRMWTRVLLPLFYTFSV HHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GFWLVALTSNILVIDVPSQPYVGFGKGPLFWFFISYFVTVCLLGVWCIRQAHRRSITPAN HHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RRRLWYLSTSFLAPFLGVFPYLIIAANTKGVPSWLSLMLLGASTTGVGVMMTLMTYSVAF CCEEEEEEHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH HGVIVPDRLVKYNFLRYVLYGPFVGVALIICLQLVEPISAATGLPRATITIFGVMLMTVM CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH MPIFIGRIRPTVDTLIYRQDSDEVRWMRRFEERAFTRQDLRQLLENTLVAVCGSLRVESG HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC FVLAPNDEHFTVQASCGPRRTIKQFLNVHDINELLQNLPHLAFSNDRIPEVEDFSIRDGF EEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE CLLPLYNSQQELLGAIGIGCRPEQLTIPTRQLIATLAHQMELALTHMQLQQNLFSSLRGL EEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC APQSASLLQLTSEIETPVTEKNDALADVALHPEFPQLVKDALSHYWGGPKLSDSPLLDLR CCCCHHHHHHHHHHCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH TVRQLLDTQGGSPTRALQGVLRQAIENIRPEDQLDPTAPEWMIYNILELRFLKGLRIREI HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH IDKLAMSESDFYRKQRVAVEEVARQLALMEDQGDRPSGSVERQRP HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MVAAFSWTNFLLAANDLTLAAIVVVGFSLFAYIALHNWRNGVARSFCLLIVGLMIVLGGA CCEEEEHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILQRQAQTEATRHVLWRIQWAGISLVPAAYYHFAESLLRSTGDPRMWTRVLLPLFYTFSV HHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GFWLVALTSNILVIDVPSQPYVGFGKGPLFWFFISYFVTVCLLGVWCIRQAHRRSITPAN HHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RRRLWYLSTSFLAPFLGVFPYLIIAANTKGVPSWLSLMLLGASTTGVGVMMTLMTYSVAF CCEEEEEEHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH HGVIVPDRLVKYNFLRYVLYGPFVGVALIICLQLVEPISAATGLPRATITIFGVMLMTVM CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH MPIFIGRIRPTVDTLIYRQDSDEVRWMRRFEERAFTRQDLRQLLENTLVAVCGSLRVESG HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC FVLAPNDEHFTVQASCGPRRTIKQFLNVHDINELLQNLPHLAFSNDRIPEVEDFSIRDGF EEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE CLLPLYNSQQELLGAIGIGCRPEQLTIPTRQLIATLAHQMELALTHMQLQQNLFSSLRGL EEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC APQSASLLQLTSEIETPVTEKNDALADVALHPEFPQLVKDALSHYWGGPKLSDSPLLDLR CCCCHHHHHHHHHHCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH TVRQLLDTQGGSPTRALQGVLRQAIENIRPEDQLDPTAPEWMIYNILELRFLKGLRIREI HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH IDKLAMSESDFYRKQRVAVEEVARQLALMEDQGDRPSGSVERQRP HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA