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The map label for this gene is cysS [H]

Identifier: 159900776

GI number: 159900776

Start: 5438681

End: 5439871

Strand: Reverse

Name: cysS [H]

Synonym: Haur_4263

Alternate gene names: 159900776

Gene position: 5439871-5438681 (Counterclockwise)

Preceding gene: 159900777

Following gene: 159900774

Centisome position: 85.71

GC content: 49.79

Gene sequence:

>1191_bases
GTGTTACTTTATGATACTCTGTGCCAAACGCCTGTCGCCATGGAGCCAATCGATGGCTTTGTGCGCATGTATGTATGCGG
CGTGACTCCCTATGATACAACCCATATGGGCCATGCGCGGACCTATGTGGTCTACGATACAATTCGGCGCTATTTGGAAT
GGCAAGGCTTGCCAGTGTTGTATGTGCAAAATGTGACTGATATTGATGATGATATTTTGCGCAAAAGTGCCCAACTTGGC
CTAACTTGGGATGAATTAGGTCGCCAAGAGACCGAGCGCTTTTTACGTGATATGGATGCCTTGAATGTGCGCATGCCTAA
TCACTATGTCAAAGCTACTGATGCCATCGCCAAAATTATCGAGGTAAATAGTGGCTTGATCGAGCGTGGCGTGGCCTATG
AAAATCAAGGCAATGTCTATTTCAATGTTCATGCTGATCCCGATTTTGGCAGCTTGGCTCACAGCGATTATGCCAGTATG
TTGGCGATTGCCAATGAGCGCGGTAATTTCCCCGATGATCCGCATAAACGCGACCCATTGGATTTTGTGTTGTGGCAGGC
GACCAAGCCCGGCGAGCCATGGTGGGATAGCCCGTGGGGTCGCGGTCGGCCAGGCTGGCATATCGAGTGTACCGCCATGG
TGCTAGAGTATCTCGGGCCGCAGATCAATATTCATGGTGGTGGCAGCGATTTACAATTCCCGCATCATGCTTGCGAATTA
GCGCAAGCCGAGAATTTTACTGGCCAAAGCCCGCACGTTGCTGCTTGGTCGCATATCGGCATGGTCTATTACGAAGGCGA
AAAAATGAGCAAATCGCTGGGCAATTTGGTGTTGGCCAGCAAAACCTTGCAACATTACAGCGCCGATGCCATTCGCTTGG
GCTTGCTCAAATATTACTATCGCGATCAATTTGAATATAGCAATGATGATGTGGCATGGGGCGAACGCACGGTTGAACGT
TTCAAACAGGCAGTCAATAGTGGCGTATCTGGTGGCGCACTTCATGCTGAAGAGCTGCGCAATGAGGCAATCGCAGCACT
TGATGCCGATTTTCAAACACCAGCCTGTTTACAAGCGTTAATCACGTTGGCGGAAGCCAGTATTAATGGCGAAATTGATG
ACGCTGAGTTGGCTGCTACAACCTTGCGTGAGCTAGGCGCAGTGCTTGGCTTACGTACTGAATTGTGGTAG

Upstream 100 bases:

>100_bases
GTGGCGTGGAAGATCGGGCTGGCTCATATGAAGATGGTTTGCGAATTGAACGTGACGATGCACTTGATCAAACGCTCGAC
GACCAAGGGGAGGCCTAGTC

Downstream 100 bases:

>100_bases
TTGAATGAACGAACAACAAGGGTAGCCATGTTAAACTACCCTTGTTGGCGTAACGCTTTATTGGCTTGGTGTGCCTAAAT
CTTCCTCAAGTGCCCGTACC

Product: cysteinyl-tRNA synthetase

Products: NA

Alternate protein names: Cysteine--tRNA ligase; CysRS [H]

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MLLYDTLCQTPVAMEPIDGFVRMYVCGVTPYDTTHMGHARTYVVYDTIRRYLEWQGLPVLYVQNVTDIDDDILRKSAQLG
LTWDELGRQETERFLRDMDALNVRMPNHYVKATDAIAKIIEVNSGLIERGVAYENQGNVYFNVHADPDFGSLAHSDYASM
LAIANERGNFPDDPHKRDPLDFVLWQATKPGEPWWDSPWGRGRPGWHIECTAMVLEYLGPQINIHGGGSDLQFPHHACEL
AQAENFTGQSPHVAAWSHIGMVYYEGEKMSKSLGNLVLASKTLQHYSADAIRLGLLKYYYRDQFEYSNDDVAWGERTVER
FKQAVNSGVSGGALHAEELRNEAIAALDADFQTPACLQALITLAEASINGEIDDAELAATTLRELGAVLGLRTELW

Sequences:

>Translated_396_residues
MLLYDTLCQTPVAMEPIDGFVRMYVCGVTPYDTTHMGHARTYVVYDTIRRYLEWQGLPVLYVQNVTDIDDDILRKSAQLG
LTWDELGRQETERFLRDMDALNVRMPNHYVKATDAIAKIIEVNSGLIERGVAYENQGNVYFNVHADPDFGSLAHSDYASM
LAIANERGNFPDDPHKRDPLDFVLWQATKPGEPWWDSPWGRGRPGWHIECTAMVLEYLGPQINIHGGGSDLQFPHHACEL
AQAENFTGQSPHVAAWSHIGMVYYEGEKMSKSLGNLVLASKTLQHYSADAIRLGLLKYYYRDQFEYSNDDVAWGERTVER
FKQAVNSGVSGGALHAEELRNEAIAALDADFQTPACLQALITLAEASINGEIDDAELAATTLRELGAVLGLRTELW
>Mature_396_residues
MLLYDTLCQTPVAMEPIDGFVRMYVCGVTPYDTTHMGHARTYVVYDTIRRYLEWQGLPVLYVQNVTDIDDDILRKSAQLG
LTWDELGRQETERFLRDMDALNVRMPNHYVKATDAIAKIIEVNSGLIERGVAYENQGNVYFNVHADPDFGSLAHSDYASM
LAIANERGNFPDDPHKRDPLDFVLWQATKPGEPWWDSPWGRGRPGWHIECTAMVLEYLGPQINIHGGGSDLQFPHHACEL
AQAENFTGQSPHVAAWSHIGMVYYEGEKMSKSLGNLVLASKTLQHYSADAIRLGLLKYYYRDQFEYSNDDVAWGERTVER
FKQAVNSGVSGGALHAEELRNEAIAALDADFQTPACLQALITLAEASINGEIDDAELAATTLRELGAVLGLRTELW

Specific function: Unknown

COG id: COG0215

COG function: function code J; Cysteinyl-tRNA synthetase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Homo sapiens, GI13375695, Length=367, Percent_Identity=36.2397820163488, Blast_Score=216, Evalue=4e-56,
Organism=Homo sapiens, GI10835051, Length=225, Percent_Identity=38.2222222222222, Blast_Score=169, Evalue=5e-42,
Organism=Homo sapiens, GI21269877, Length=225, Percent_Identity=38.2222222222222, Blast_Score=169, Evalue=6e-42,
Organism=Homo sapiens, GI62240992, Length=225, Percent_Identity=38.2222222222222, Blast_Score=169, Evalue=6e-42,
Organism=Homo sapiens, GI303304987, Length=225, Percent_Identity=38.2222222222222, Blast_Score=168, Evalue=6e-42,
Organism=Escherichia coli, GI1786737, Length=395, Percent_Identity=40.7594936708861, Blast_Score=291, Evalue=6e-80,
Organism=Caenorhabditis elegans, GI17509795, Length=242, Percent_Identity=35.1239669421488, Blast_Score=144, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17509797, Length=242, Percent_Identity=35.1239669421488, Blast_Score=144, Evalue=6e-35,
Organism=Saccharomyces cerevisiae, GI6324082, Length=341, Percent_Identity=31.0850439882698, Blast_Score=159, Evalue=6e-40,
Organism=Drosophila melanogaster, GI19922218, Length=309, Percent_Identity=38.5113268608414, Blast_Score=211, Evalue=6e-55,
Organism=Drosophila melanogaster, GI19922364, Length=351, Percent_Identity=33.9031339031339, Blast_Score=181, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015803
- InterPro:   IPR015273
- InterPro:   IPR014729
- InterPro:   IPR009080 [H]

Pfam domain/function: PF09190 DALR_2; PF01406 tRNA-synt_1e [H]

EC number: =6.1.1.16 [H]

Molecular weight: Translated: 44445; Mature: 44445

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLYDTLCQTPVAMEPIDGFVRMYVCGVTPYDTTHMGHARTYVVYDTIRRYLEWQGLPVL
CCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEE
YVQNVTDIDDDILRKSAQLGLTWDELGRQETERFLRDMDALNVRMPNHYVKATDAIAKII
EECCCCCCCHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHH
EVNSGLIERGVAYENQGNVYFNVHADPDFGSLAHSDYASMLAIANERGNFPDDPHKRDPL
HHCCCHHHCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DFVLWQATKPGEPWWDSPWGRGRPGWHIECTAMVLEYLGPQINIHGGGSDLQFPHHACEL
EEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHH
AQAENFTGQSPHVAAWSHIGMVYYEGEKMSKSLGNLVLASKTLQHYSADAIRLGLLKYYY
HHHCCCCCCCCCEEHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
RDQFEYSNDDVAWGERTVERFKQAVNSGVSGGALHAEELRNEAIAALDADFQTPACLQAL
HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
ITLAEASINGEIDDAELAATTLRELGAVLGLRTELW
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLLYDTLCQTPVAMEPIDGFVRMYVCGVTPYDTTHMGHARTYVVYDTIRRYLEWQGLPVL
CCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEE
YVQNVTDIDDDILRKSAQLGLTWDELGRQETERFLRDMDALNVRMPNHYVKATDAIAKII
EECCCCCCCHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHH
EVNSGLIERGVAYENQGNVYFNVHADPDFGSLAHSDYASMLAIANERGNFPDDPHKRDPL
HHCCCHHHCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DFVLWQATKPGEPWWDSPWGRGRPGWHIECTAMVLEYLGPQINIHGGGSDLQFPHHACEL
EEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHH
AQAENFTGQSPHVAAWSHIGMVYYEGEKMSKSLGNLVLASKTLQHYSADAIRLGLLKYYY
HHHCCCCCCCCCEEHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
RDQFEYSNDDVAWGERTVERFKQAVNSGVSGGALHAEELRNEAIAALDADFQTPACLQAL
HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
ITLAEASINGEIDDAELAATTLRELGAVLGLRTELW
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA