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The map label for this gene is yqeN [H]

Identifier: 159900773

GI number: 159900773

Start: 5435581

End: 5436552

Strand: Reverse

Name: yqeN [H]

Synonym: Haur_4260

Alternate gene names: 159900773

Gene position: 5436552-5435581 (Counterclockwise)

Preceding gene: 159900774

Following gene: 159900772

Centisome position: 85.66

GC content: 51.03

Gene sequence:

>972_bases
ATGTTGTATCTCTTTTTTGGCCCCGACGATTATACCCGCCAAGCCACGATCAACGTGCTCAAGGCGGCTTTTCCACCTGA
TGCCGCTGCTTTCAATGTGGTGGTGCTCCACGGCAAATCGATCAAACTCAACGAAGTGCGCACTGCTTGCGAAGCGTATC
CTGTTTTTCATGATCGCCGCTTGGTGATTGTGCATGATCTGTTAAAGCATGCCAAATCGGCTGAAATGCGCGATGGCCTC
AAAAGCTTGGTTCAGCGCTTGCCCTCAACCACCGACCTTGTGCTCAACGAAAGTGATGCCCCTGATAGCCGTTTGAGTGT
GGTCAAAGATATTCAGGCTTTGGTTAAAACTAAACAAGCTGAGCAGCGCGAATTTAATTTGCGTGAAGGCAATGCCCTCA
TCGCTTGGATGCAGCAAGAAGCCCAATCCAACGGCGTGCAATTACGCCCTGATGCCGCTCAACATTTGGCCAATTATGTG
GGCAGCGATGGTTGGATGCTGCATAACGAAATTGCCAAATTAGCCGCCTATGTGGGCCAAAATGGCACAATCAGCATGCG
CGAGGTCGATTTGCTGGTGGCTGATGAGACAGAAACCAACTTATTTAATTTTATCGACGCATTAAGTACTCGGCGCGGTG
CGGCGGCGGTGCAAGGCTTAAATGGCTTATTAGCCGATGATGCCGCGCCGTTGTATATTTTGACCATGATTGCCCGCCAA
GCGCGTTTGATGTTGGCGGCGCAGAGTGCTGGACGCGTTGCACCTGATGAATTAGCCAAACTTTTGGGTCAAAAACCGTT
TGTAGCCCGCAAAGCAGCTGAGCAAGCCCGCAATTTCAGCCCAACTGAGCTGCGCATGCTCCACGAACGGGTGGTGCAGA
TTGACCACGGGATTAAAACAGGTAAAATCGACGCAGAAGGCGCACTAGCCAGTCTCGTTGGCGATTTTGGCTTTGCGCCA
AACCGAAAATAA

Upstream 100 bases:

>100_bases
CTAGTGCGGCTGGTGCTGTACGACTCAAGGGCTGGCACCCACCTGCGAAAGCAGGTTCAAAACTACCCCGCTCACGGCTG
ATAGAAGGGTGTTTACTTTT

Downstream 100 bases:

>100_bases
TCATTTTAAGGCTTAGATTGCGGTTAAACCTATTGCGTAGAGTGATGCGACTCGTTAGAATAGCTATGAGTCCAACAATC
TGCCCATACAACACGCAACA

Product: DNA polymerase III subunit delta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLYLFFGPDDYTRQATINVLKAAFPPDAAAFNVVVLHGKSIKLNEVRTACEAYPVFHDRRLVIVHDLLKHAKSAEMRDGL
KSLVQRLPSTTDLVLNESDAPDSRLSVVKDIQALVKTKQAEQREFNLREGNALIAWMQQEAQSNGVQLRPDAAQHLANYV
GSDGWMLHNEIAKLAAYVGQNGTISMREVDLLVADETETNLFNFIDALSTRRGAAAVQGLNGLLADDAAPLYILTMIARQ
ARLMLAAQSAGRVAPDELAKLLGQKPFVARKAAEQARNFSPTELRMLHERVVQIDHGIKTGKIDAEGALASLVGDFGFAP
NRK

Sequences:

>Translated_323_residues
MLYLFFGPDDYTRQATINVLKAAFPPDAAAFNVVVLHGKSIKLNEVRTACEAYPVFHDRRLVIVHDLLKHAKSAEMRDGL
KSLVQRLPSTTDLVLNESDAPDSRLSVVKDIQALVKTKQAEQREFNLREGNALIAWMQQEAQSNGVQLRPDAAQHLANYV
GSDGWMLHNEIAKLAAYVGQNGTISMREVDLLVADETETNLFNFIDALSTRRGAAAVQGLNGLLADDAAPLYILTMIARQ
ARLMLAAQSAGRVAPDELAKLLGQKPFVARKAAEQARNFSPTELRMLHERVVQIDHGIKTGKIDAEGALASLVGDFGFAP
NRK
>Mature_323_residues
MLYLFFGPDDYTRQATINVLKAAFPPDAAAFNVVVLHGKSIKLNEVRTACEAYPVFHDRRLVIVHDLLKHAKSAEMRDGL
KSLVQRLPSTTDLVLNESDAPDSRLSVVKDIQALVKTKQAEQREFNLREGNALIAWMQQEAQSNGVQLRPDAAQHLANYV
GSDGWMLHNEIAKLAAYVGQNGTISMREVDLLVADETETNLFNFIDALSTRRGAAAVQGLNGLLADDAAPLYILTMIARQ
ARLMLAAQSAGRVAPDELAKLLGQKPFVARKAAEQARNFSPTELRMLHERVVQIDHGIKTGKIDAEGALASLVGDFGFAP
NRK

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: NA

Molecular weight: Translated: 35463; Mature: 35463

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYLFFGPDDYTRQATINVLKAAFPPDAAAFNVVVLHGKSIKLNEVRTACEAYPVFHDRR
CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCC
LVIVHDLLKHAKSAEMRDGLKSLVQRLPSTTDLVLNESDAPDSRLSVVKDIQALVKTKQA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
EQREFNLREGNALIAWMQQEAQSNGVQLRPDAAQHLANYVGSDGWMLHNEIAKLAAYVGQ
HHHHCCCCCCCEEEEHHHHHHHCCCCEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
NGTISMREVDLLVADETETNLFNFIDALSTRRGAAAVQGLNGLLADDAAPLYILTMIARQ
CCCEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHCCCHHCCCCCHHHHHHHHHHH
ARLMLAAQSAGRVAPDELAKLLGQKPFVARKAAEQARNFSPTELRMLHERVVQIDHGIKT
HHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
GKIDAEGALASLVGDFGFAPNRK
CCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLYLFFGPDDYTRQATINVLKAAFPPDAAAFNVVVLHGKSIKLNEVRTACEAYPVFHDRR
CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCC
LVIVHDLLKHAKSAEMRDGLKSLVQRLPSTTDLVLNESDAPDSRLSVVKDIQALVKTKQA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
EQREFNLREGNALIAWMQQEAQSNGVQLRPDAAQHLANYVGSDGWMLHNEIAKLAAYVGQ
HHHHCCCCCCCEEEEHHHHHHHCCCCEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
NGTISMREVDLLVADETETNLFNFIDALSTRRGAAAVQGLNGLLADDAAPLYILTMIARQ
CCCEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHCCCHHCCCCCHHHHHHHHHHH
ARLMLAAQSAGRVAPDELAKLLGQKPFVARKAAEQARNFSPTELRMLHERVVQIDHGIKT
HHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
GKIDAEGALASLVGDFGFAPNRK
CCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]