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The map label for this gene is ybhS [H]

Identifier: 159900743

GI number: 159900743

Start: 5392224

End: 5393351

Strand: Reverse

Name: ybhS [H]

Synonym: Haur_4230

Alternate gene names: 159900743

Gene position: 5393351-5392224 (Counterclockwise)

Preceding gene: 159900744

Following gene: 159900738

Centisome position: 84.98

GC content: 48.05

Gene sequence:

>1128_bases
ATGTTTGTGCAACTCTATCTATCGCAATGGCGCGAATTTTCCCGCGACCGAATGGCACTGTTTTTTACGATTCTGTTTCC
GCTGATTTTTATCAGCATTTTCGGCTTGCTCTATAGCGGCGGTAGCAAATTCGACGAGAAAGTCGGGATTGTGTTGGAAG
ATCAAGGCCCAATCGGCCCACAAATCGCTAGCGCGATTGAAGGCTTAACCAAAACTCCCGATGGCCAAGATCCTGATGAA
AATGTCTTTTCGGACATGAAGTTTAGCCGTGGCACGGCCAACGAGCTTGAGGCTCAATTGCAAAATGGCGATTTGCAAGC
CTTAGTGATTATTCCGGCTGGTCTGAGCGATAGTATTACCAGTGGTCAGTCAGCTAGCGTTACCGTCAAAGTGGATCAGA
CCAGTCAAGTCTTTGCCCCCTTCTTCCAAGGCGTGGTTGATAACATCATCGCATCGGTTGATCAAAATATTACTCAATCC
AAGCCAATGCTGACAATGCAAGTTCAATCGGTGCTTTCGAGCCAAATCCGTGGCATCGACCTCTTGATTCCTGGGATTTT
GGCGATGTCGATTATGCAGCTTGGCTTGTTTGCCACGGCTCAACCGATGATTGCCATGCGTACTCAAGGGGTGTTGAAAC
GCTTCAATGCAACCCCCTTGCCGCGTTGGATGCTCTTGATAAGCTATGTAGCGATGCGTTTAACCATTGGTTTGTTGCAA
ACCATCATTATCATCGCAGTCGGCAAGCTGATGTTTGATGTGGCAATTTTGGGCAATATCTTTGTGTTGATTGGTTGGCT
CTTGCTGAGCATTTTGATGTTTATTGCCATTGGCTTCTTTGTGGCTGCAATTGCCAAAACCGAAGAAAGCGGCAATGCCA
TCACCCAGTTAATCAACTTCCCAATGTTGTTTCTCTCAGGGGTGTTCTTCCCCGTGACGGGCTTGCCCGATTGGTTGCAA
GTAGTGGTTAAGGCCTTCCCCTTGACCTATACGGTTGATGCCTTGAAGCAGGTGATGATCAACGCGCCGCCAATTAGTAC
GCCACTGGTTAATTTGCTCGTTCAAGCAGCGTGGCTGATTGTGATGACCGTACTCTCAATCCGCTTCTTCAAGTGGGAAG
CCCGCTAA

Upstream 100 bases:

>100_bases
GAGCTGCGCGGTTTTACGATTCGGGCGGCAACTTTGGAAGATGTGTTTTTGAAATTGACTGGTCGGCGGATTCGCGACTA
AGTGTGGGAGCAACCAAATA

Downstream 100 bases:

>100_bases
GAAAATCAAAAGGCAGAAGTCAAAAAGCAAAAGTAGTATTGCTTCGCTTTTTGGCTTCTGCTTTTTTGCCCTTTGATTTT
TGATGTTTGCCTTGCTAAAA

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MFVQLYLSQWREFSRDRMALFFTILFPLIFISIFGLLYSGGSKFDEKVGIVLEDQGPIGPQIASAIEGLTKTPDGQDPDE
NVFSDMKFSRGTANELEAQLQNGDLQALVIIPAGLSDSITSGQSASVTVKVDQTSQVFAPFFQGVVDNIIASVDQNITQS
KPMLTMQVQSVLSSQIRGIDLLIPGILAMSIMQLGLFATAQPMIAMRTQGVLKRFNATPLPRWMLLISYVAMRLTIGLLQ
TIIIIAVGKLMFDVAILGNIFVLIGWLLLSILMFIAIGFFVAAIAKTEESGNAITQLINFPMLFLSGVFFPVTGLPDWLQ
VVVKAFPLTYTVDALKQVMINAPPISTPLVNLLVQAAWLIVMTVLSIRFFKWEAR

Sequences:

>Translated_375_residues
MFVQLYLSQWREFSRDRMALFFTILFPLIFISIFGLLYSGGSKFDEKVGIVLEDQGPIGPQIASAIEGLTKTPDGQDPDE
NVFSDMKFSRGTANELEAQLQNGDLQALVIIPAGLSDSITSGQSASVTVKVDQTSQVFAPFFQGVVDNIIASVDQNITQS
KPMLTMQVQSVLSSQIRGIDLLIPGILAMSIMQLGLFATAQPMIAMRTQGVLKRFNATPLPRWMLLISYVAMRLTIGLLQ
TIIIIAVGKLMFDVAILGNIFVLIGWLLLSILMFIAIGFFVAAIAKTEESGNAITQLINFPMLFLSGVFFPVTGLPDWLQ
VVVKAFPLTYTVDALKQVMINAPPISTPLVNLLVQAAWLIVMTVLSIRFFKWEAR
>Mature_375_residues
MFVQLYLSQWREFSRDRMALFFTILFPLIFISIFGLLYSGGSKFDEKVGIVLEDQGPIGPQIASAIEGLTKTPDGQDPDE
NVFSDMKFSRGTANELEAQLQNGDLQALVIIPAGLSDSITSGQSASVTVKVDQTSQVFAPFFQGVVDNIIASVDQNITQS
KPMLTMQVQSVLSSQIRGIDLLIPGILAMSIMQLGLFATAQPMIAMRTQGVLKRFNATPLPRWMLLISYVAMRLTIGLLQ
TIIIIAVGKLMFDVAILGNIFVLIGWLLLSILMFIAIGFFVAAIAKTEESGNAITQLINFPMLFLSGVFFPVTGLPDWLQ
VVVKAFPLTYTVDALKQVMINAPPISTPLVNLLVQAAWLIVMTVLSIRFFKWEAR

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=346, Percent_Identity=21.9653179190751, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787010, Length=286, Percent_Identity=20.979020979021, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI85725260, Length=288, Percent_Identity=22.5694444444444, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI85725262, Length=288, Percent_Identity=22.5694444444444, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24582014, Length=400, Percent_Identity=23.5, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24582012, Length=400, Percent_Identity=23.5, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24650855, Length=196, Percent_Identity=25.5102040816327, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24650853, Length=196, Percent_Identity=25.5102040816327, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41234; Mature: 41234

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVQLYLSQWREFSRDRMALFFTILFPLIFISIFGLLYSGGSKFDEKVGIVLEDQGPIGP
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCH
QIASAIEGLTKTPDGQDPDENVFSDMKFSRGTANELEAQLQNGDLQALVIIPAGLSDSIT
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCC
SGQSASVTVKVDQTSQVFAPFFQGVVDNIIASVDQNITQSKPMLTMQVQSVLSSQIRGID
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHCCHH
LLIPGILAMSIMQLGLFATAQPMIAMRTQGVLKRFNATPLPRWMLLISYVAMRLTIGLLQ
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TIIIIAVGKLMFDVAILGNIFVLIGWLLLSILMFIAIGFFVAAIAKTEESGNAITQLINF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
PMLFLSGVFFPVTGLPDWLQVVVKAFPLTYTVDALKQVMINAPPISTPLVNLLVQAAWLI
HHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VMTVLSIRFFKWEAR
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MFVQLYLSQWREFSRDRMALFFTILFPLIFISIFGLLYSGGSKFDEKVGIVLEDQGPIGP
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCH
QIASAIEGLTKTPDGQDPDENVFSDMKFSRGTANELEAQLQNGDLQALVIIPAGLSDSIT
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCC
SGQSASVTVKVDQTSQVFAPFFQGVVDNIIASVDQNITQSKPMLTMQVQSVLSSQIRGID
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHCCHH
LLIPGILAMSIMQLGLFATAQPMIAMRTQGVLKRFNATPLPRWMLLISYVAMRLTIGLLQ
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TIIIIAVGKLMFDVAILGNIFVLIGWLLLSILMFIAIGFFVAAIAKTEESGNAITQLINF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
PMLFLSGVFFPVTGLPDWLQVVVKAFPLTYTVDALKQVMINAPPISTPLVNLLVQAAWLI
HHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VMTVLSIRFFKWEAR
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]