Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900689

Identifier: 159900689

GI number: 159900689

Start: 5325414

End: 5325986

Strand: Reverse

Name: 159900689

Synonym: Haur_4176

Alternate gene names: NA

Gene position: 5325986-5325414 (Counterclockwise)

Preceding gene: 159900692

Following gene: 159900688

Centisome position: 83.92

GC content: 44.68

Gene sequence:

>573_bases
ATGAGCTACAGCGTTCCAGTCAACAATCAGCATTTGAAACTACTGCCTAATGAAGAAATTCTGTGGCAAGGCCAGCCGGT
CCAAGGCTTTAAGTTTTATCCCGTTGATCTTGCGCCCATAGTTTTTGGTGGATTGTGGCTTTATTTCGGAATTACGCAAG
TTATCTTTGCAGATGGGAAACAATCAACGTCGGCGAACTGGATTATCCTTGGCTTATTTGTTTCATTTGCAAGTTATATG
GGAATTGGTAGGTTGTTTTTGGGCCGCTACTTACGCCGCCATACCTACTATATGCTGACCAACCGTCGAGCATTGATTCA
CATCCATTGGTTGAAACGCGATTATCAACATAGCCACCATTTGGCACGAATCGACTCCGTTGTCCTTGATCGCCTGCCGA
ATGGCCAGCAAAGTATTATCTTCAATGATAAACCAGCGCTCCCCCAATATTTATTCCTTGGGGTAAACAGTGGATTTTCC
ACTTTTTTTGAAGGTGTGCCCAATGCTGAAGCGCTGTACCAACAGATTCTCGACCTGCAAGCGAGTTTGCAGAGTAACCA
ATCAGGTAGCTAA

Upstream 100 bases:

>100_bases
TGGATGAACAAATGTTAAGAGAACTATGGGCTAGGGTCATGGAACAAACAGCGTGCTAGAGCGTACCAATGGAGTCGATT
TAGATGATGGAGAAATTAAG

Downstream 100 bases:

>100_bases
ATCCCCTATGGTAGGCTATAAAAACGGTACTTTTGCGGCACATTTGTTTCTTGACGATGAATCTTGCGATTGCTATAATT
GAAAAGCCGAAGTAGCAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSYSVPVNNQHLKLLPNEEILWQGQPVQGFKFYPVDLAPIVFGGLWLYFGITQVIFADGKQSTSANWIILGLFVSFASYM
GIGRLFLGRYLRRHTYYMLTNRRALIHIHWLKRDYQHSHHLARIDSVVLDRLPNGQQSIIFNDKPALPQYLFLGVNSGFS
TFFEGVPNAEALYQQILDLQASLQSNQSGS

Sequences:

>Translated_190_residues
MSYSVPVNNQHLKLLPNEEILWQGQPVQGFKFYPVDLAPIVFGGLWLYFGITQVIFADGKQSTSANWIILGLFVSFASYM
GIGRLFLGRYLRRHTYYMLTNRRALIHIHWLKRDYQHSHHLARIDSVVLDRLPNGQQSIIFNDKPALPQYLFLGVNSGFS
TFFEGVPNAEALYQQILDLQASLQSNQSGS
>Mature_189_residues
SYSVPVNNQHLKLLPNEEILWQGQPVQGFKFYPVDLAPIVFGGLWLYFGITQVIFADGKQSTSANWIILGLFVSFASYMG
IGRLFLGRYLRRHTYYMLTNRRALIHIHWLKRDYQHSHHLARIDSVVLDRLPNGQQSIIFNDKPALPQYLFLGVNSGFST
FFEGVPNAEALYQQILDLQASLQSNQSGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21736; Mature: 21605

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSVPVNNQHLKLLPNEEILWQGQPVQGFKFYPVDLAPIVFGGLWLYFGITQVIFADGK
CCCCCCCCCCEEEECCCCCEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
QSTSANWIILGLFVSFASYMGIGRLFLGRYLRRHTYYMLTNRRALIHIHWLKRDYQHSHH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEEEHHHHHHHHHH
LARIDSVVLDRLPNGQQSIIFNDKPALPQYLFLGVNSGFSTFFEGVPNAEALYQQILDLQ
HHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH
ASLQSNQSGS
HHHCCCCCCC
>Mature Secondary Structure 
SYSVPVNNQHLKLLPNEEILWQGQPVQGFKFYPVDLAPIVFGGLWLYFGITQVIFADGK
CCCCCCCCCEEEECCCCCEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
QSTSANWIILGLFVSFASYMGIGRLFLGRYLRRHTYYMLTNRRALIHIHWLKRDYQHSHH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEEEHHHHHHHHHH
LARIDSVVLDRLPNGQQSIIFNDKPALPQYLFLGVNSGFSTFFEGVPNAEALYQQILDLQ
HHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH
ASLQSNQSGS
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA