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The map label for this gene is ygcF [C]

Identifier: 159900637

GI number: 159900637

Start: 5271617

End: 5272309

Strand: Direct

Name: ygcF [C]

Synonym: Haur_4124

Alternate gene names: 159900637

Gene position: 5271617-5272309 (Clockwise)

Preceding gene: 159900636

Following gene: 159900638

Centisome position: 83.06

GC content: 51.66

Gene sequence:

>693_bases
ATGAATGTGATGGAAGTTTATCGCTCAGTCCAAGGTGAAGGCACCTTGATGGGTGTGCCAACCACGTTTGTACGCTTTTT
TGCCTGCAATTTGCGCTGTAGCTGGTGCGATACCAAATATTCATGGAGCGTCAAAGAGGGCGGTAAATGGGAAGATTTGC
CAATTGCGACCCTCGCGCAGCGCATTGCCGACCAAGGAGCACGCCATGTCGTATTAACTGGCGGCGAGCCAATGTTGCAG
CGCGAATTGCCAGCCTTGGCTCAAACCCTTCGAGCTGCTGGCCATCATCTCACAGTTGAAACTAATAGCACCCTCTTTCG
CCCCGAACTGGTTGAGTTGATCAATCTCTGGAGCTTATCGCCAAAATTGGCCGGAGCCAACACCGGCATGTTGCGGCTCG
AACCGTTACGCCAATTTATGCAATTGCCAGCCGAACAGCAACAATGGAAATTTGTGATCACTGGCGAGAGCGATTTAGCT
CAATTGCATCAATTTGTCAGTGAACATCAGGCTTTTGCCGAGGCTCAATTGCCAATTATTTGGCAGCCAGAAGGTCGCTG
GGCCGAGCGCGATTATGCTCATGCTCTCGAATGGCTGGCCGAACGTGCTCAATTGCCTGAATGGCGACCGTTCAATGTGC
GCGTGCTGCCGCAAATGCATGTGCTGATTTGGGGCCAAAAACGGCTTGTCTAA

Upstream 100 bases:

>100_bases
AGCAAGCGCCTGAATTTGCCGCCTTGCTATGGAGAATCCGGCTGTGGGAGACTGCCAGTGGCTATGTTGAAATTAGCCGT
GCCGAACGCGAGGCCCAGCC

Downstream 100 bases:

>100_bases
TGCTTCCAAGGGAGTTCTGTGTGGCACTACAATTCCTAAGCCTACCAACAGTTTCATTGCGAAGCTGGGTTTTGGTAGGC
TTATTCAGTTTGGGGCTGGT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNVMEVYRSVQGEGTLMGVPTTFVRFFACNLRCSWCDTKYSWSVKEGGKWEDLPIATLAQRIADQGARHVVLTGGEPMLQ
RELPALAQTLRAAGHHLTVETNSTLFRPELVELINLWSLSPKLAGANTGMLRLEPLRQFMQLPAEQQQWKFVITGESDLA
QLHQFVSEHQAFAEAQLPIIWQPEGRWAERDYAHALEWLAERAQLPEWRPFNVRVLPQMHVLIWGQKRLV

Sequences:

>Translated_230_residues
MNVMEVYRSVQGEGTLMGVPTTFVRFFACNLRCSWCDTKYSWSVKEGGKWEDLPIATLAQRIADQGARHVVLTGGEPMLQ
RELPALAQTLRAAGHHLTVETNSTLFRPELVELINLWSLSPKLAGANTGMLRLEPLRQFMQLPAEQQQWKFVITGESDLA
QLHQFVSEHQAFAEAQLPIIWQPEGRWAERDYAHALEWLAERAQLPEWRPFNVRVLPQMHVLIWGQKRLV
>Mature_230_residues
MNVMEVYRSVQGEGTLMGVPTTFVRFFACNLRCSWCDTKYSWSVKEGGKWEDLPIATLAQRIADQGARHVVLTGGEPMLQ
RELPALAQTLRAAGHHLTVETNSTLFRPELVELINLWSLSPKLAGANTGMLRLEPLRQFMQLPAEQQQWKFVITGESDLA
QLHQFVSEHQAFAEAQLPIIWQPEGRWAERDYAHALEWLAERAQLPEWRPFNVRVLPQMHVLIWGQKRLV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=139, Percent_Identity=36.6906474820144, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 26381; Mature: 26381

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVMEVYRSVQGEGTLMGVPTTFVRFFACNLRCSWCDTKYSWSVKEGGKWEDLPIATLAQ
CCHHHHHHHHCCCCEEEECCHHHHHHHHHCCEEEECCCCEEEECCCCCCCCCCCHHHHHH
RIADQGARHVVLTGGEPMLQRELPALAQTLRAAGHHLTVETNSTLFRPELVELINLWSLS
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCC
PKLAGANTGMLRLEPLRQFMQLPAEQQQWKFVITGESDLAQLHQFVSEHQAFAEAQLPII
CCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEE
WQPEGRWAERDYAHALEWLAERAQLPEWRPFNVRVLPQMHVLIWGQKRLV
ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCCCC
>Mature Secondary Structure
MNVMEVYRSVQGEGTLMGVPTTFVRFFACNLRCSWCDTKYSWSVKEGGKWEDLPIATLAQ
CCHHHHHHHHCCCCEEEECCHHHHHHHHHCCEEEECCCCEEEECCCCCCCCCCCHHHHHH
RIADQGARHVVLTGGEPMLQRELPALAQTLRAAGHHLTVETNSTLFRPELVELINLWSLS
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCC
PKLAGANTGMLRLEPLRQFMQLPAEQQQWKFVITGESDLAQLHQFVSEHQAFAEAQLPII
CCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEE
WQPEGRWAERDYAHALEWLAERAQLPEWRPFNVRVLPQMHVLIWGQKRLV
ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]