| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900593
Identifier: 159900593
GI number: 159900593
Start: 5212417
End: 5213433
Strand: Reverse
Name: 159900593
Synonym: Haur_4080
Alternate gene names: NA
Gene position: 5213433-5212417 (Counterclockwise)
Preceding gene: 159900594
Following gene: 159900592
Centisome position: 82.15
GC content: 54.28
Gene sequence:
>1017_bases ATGACAGACGATCCGTTAACCTCAAACCAAGCAGAATTAGCAGAGGCCGAGCCACGTCGGAGTAGCTCGGCCCCACCTCA ATTACGTGCGGCGATCAGTCGGGCATTATCACGGCGCAAAGCTGAATTGCAAAGCCAAAGCGTTGCTGAGGAAACGGTAG CTGTTGAAATTGCGCCAACTATCGTTGCCGAGCCAGAGCCGCCGATGCCGCTACGGCAAGAGCGTTATCGGGTGGCGGCA AGTCGCGCATTAAGTCGTTTGCGGCCAAGCAGTGAAACTCCACAGATTGCTAATTCAACCAGCAACCGAGGCCGTGATCG CACTCGTACTCGGTTGCGCCCGCCAACCTTGCCTAACCAACCTTTGCCCAAACTGCCAACCGATCAACCGGTGCGGCGCG AATTGCCAGCCGCAGTTGTCGCAGCCTTGCAGCCCGATAGCCTGCCCGCACCAGAAATTCAGCGCCCGCCATTGTGGGTG GCCTTCGTGGCAGGCTTAGGTTGGACAGCGATGTTGCTATGGGTCTTTTTTGGCGGGCTTTCGCCGCAATCGGGCTTTGG AGTGCGTAGTTTGTTTGGCCTGGCAACTGTGGCGTTGGGCTTAACCACGTGGCTGCCAATGCAATGGGCCTTGCGTTTGC CAGCATTAACGTGGCGTGGCACGGTTGGTTGGGCCATCATTTTCTGGATCTTGGCTTTTGTGCCCGCACCAACTACCACG ATTGCCGCAGGATTGCCCGATTTGCCGATCTACTTGATCTTTCTGAGTGGGGTATTTTTGGCTAGCAATGCCATGGTTTT GCCAATCGTCTATGTCTGGGGCATTCGGCGTTATCATAATCGGGCGCAGCGCTTTGATGTGCGGCGTTCGCATCGCCAAG CAGCCGAGGCTGGAATTTTTTGCAGTTTGTGTGTGCTTTTGGCAGCAATGAACATTTTCGAGCCAGTTACAGTGTTATTG TTAATCGCCATTTTGGTATTGAGCGAAATGGTGATTTTATCGTTACAGGCCAAATAG
Upstream 100 bases:
>100_bases AACCGTCTTGCCGCGTTTAGTGCCAGTTGCCGAGGCGATGTTGGCCTTGGTGCTGGTCGATTGTGTCTTGCAACAACGTG CCGCCCGATTGTAGGCCTGA
Downstream 100 bases:
>100_bases TCGGCTTGCATGGACGGATGGGAGTTGTTCTATGGCATATACCGTTGCAATTCTTGGAACTGGGCTGATTGGCGCGTCGC TGGGCTTAGCGTTGGGCACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MTDDPLTSNQAELAEAEPRRSSSAPPQLRAAISRALSRRKAELQSQSVAEETVAVEIAPTIVAEPEPPMPLRQERYRVAA SRALSRLRPSSETPQIANSTSNRGRDRTRTRLRPPTLPNQPLPKLPTDQPVRRELPAAVVAALQPDSLPAPEIQRPPLWV AFVAGLGWTAMLLWVFFGGLSPQSGFGVRSLFGLATVALGLTTWLPMQWALRLPALTWRGTVGWAIIFWILAFVPAPTTT IAAGLPDLPIYLIFLSGVFLASNAMVLPIVYVWGIRRYHNRAQRFDVRRSHRQAAEAGIFCSLCVLLAAMNIFEPVTVLL LIAILVLSEMVILSLQAK
Sequences:
>Translated_338_residues MTDDPLTSNQAELAEAEPRRSSSAPPQLRAAISRALSRRKAELQSQSVAEETVAVEIAPTIVAEPEPPMPLRQERYRVAA SRALSRLRPSSETPQIANSTSNRGRDRTRTRLRPPTLPNQPLPKLPTDQPVRRELPAAVVAALQPDSLPAPEIQRPPLWV AFVAGLGWTAMLLWVFFGGLSPQSGFGVRSLFGLATVALGLTTWLPMQWALRLPALTWRGTVGWAIIFWILAFVPAPTTT IAAGLPDLPIYLIFLSGVFLASNAMVLPIVYVWGIRRYHNRAQRFDVRRSHRQAAEAGIFCSLCVLLAAMNIFEPVTVLL LIAILVLSEMVILSLQAK >Mature_337_residues TDDPLTSNQAELAEAEPRRSSSAPPQLRAAISRALSRRKAELQSQSVAEETVAVEIAPTIVAEPEPPMPLRQERYRVAAS RALSRLRPSSETPQIANSTSNRGRDRTRTRLRPPTLPNQPLPKLPTDQPVRRELPAAVVAALQPDSLPAPEIQRPPLWVA FVAGLGWTAMLLWVFFGGLSPQSGFGVRSLFGLATVALGLTTWLPMQWALRLPALTWRGTVGWAIIFWILAFVPAPTTTI AAGLPDLPIYLIFLSGVFLASNAMVLPIVYVWGIRRYHNRAQRFDVRRSHRQAAEAGIFCSLCVLLAAMNIFEPVTVLLL IAILVLSEMVILSLQAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37167; Mature: 37036
Theoretical pI: Translated: 11.32; Mature: 11.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDDPLTSNQAELAEAEPRRSSSAPPQLRAAISRALSRRKAELQSQSVAEETVAVEIAPT CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC IVAEPEPPMPLRQERYRVAASRALSRLRPSSETPQIANSTSNRGRDRTRTRLRPPTLPNQ EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHCCCCCCCCCC PLPKLPTDQPVRRELPAAVVAALQPDSLPAPEIQRPPLWVAFVAGLGWTAMLLWVFFGGL CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC SPQSGFGVRSLFGLATVALGLTTWLPMQWALRLPALTWRGTVGWAIIFWILAFVPAPTTT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCHHH IAAGLPDLPIYLIFLSGVFLASNAMVLPIVYVWGIRRYHNRAQRFDVRRSHRQAAEAGIF HHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CSLCVLLAAMNIFEPVTVLLLIAILVLSEMVILSLQAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TDDPLTSNQAELAEAEPRRSSSAPPQLRAAISRALSRRKAELQSQSVAEETVAVEIAPT CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC IVAEPEPPMPLRQERYRVAASRALSRLRPSSETPQIANSTSNRGRDRTRTRLRPPTLPNQ EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHCCCCCCCCCC PLPKLPTDQPVRRELPAAVVAALQPDSLPAPEIQRPPLWVAFVAGLGWTAMLLWVFFGGL CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC SPQSGFGVRSLFGLATVALGLTTWLPMQWALRLPALTWRGTVGWAIIFWILAFVPAPTTT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCHHH IAAGLPDLPIYLIFLSGVFLASNAMVLPIVYVWGIRRYHNRAQRFDVRRSHRQAAEAGIF HHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CSLCVLLAAMNIFEPVTVLLLIAILVLSEMVILSLQAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA