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The map label for this gene is ygeR [C]

Identifier: 159900539

GI number: 159900539

Start: 5139820

End: 5141439

Strand: Direct

Name: ygeR [C]

Synonym: Haur_4026

Alternate gene names: 159900539

Gene position: 5139820-5141439 (Clockwise)

Preceding gene: 159900538

Following gene: 159900546

Centisome position: 80.99

GC content: 53.64

Gene sequence:

>1620_bases
ATGACAGAGAAGCGAACTCCGCGGCGACGTGTTCAACGGGCACAAACGCAAAACAACGCCGAAGTTATTTTGCTACCAGC
TCCTAACCACACCACTACCGCATTTCGCCAAAAATCTGATACTGGCCGGATTGAGTCACTCAATCGTGGTGGCCGCTCTG
CTCAACGACGGCGCAAGCAAGAACAACGCGCGGCCTCGATTGCGCGATCTTCGCTAGCGCAAATCGCTGGCACACCTACT
CGTGCCCCACAAGCAATTTCTGAGCCAAAACAACCACGGCGCTCATTCAAAGCCGCCGCTCAATCGGTGCGTCAGCGTTT
GCAGCTTCAACGCCGTTTGGTTGCACATAGTGTGATCCTGTTGGCCGCCTGTGTGGTGGCTTGGGGTCGCGGTTTTCCAC
TTAATCCAGTTTCTGATAATGCCACTAATCAAGCAATTCCCGAGGTTTTAGCTGCGGCCCAGTTGGTCGATGAAGTTGAA
GCAGGTAATTTCCAACGGGTTGTGATCCCAATTTCAGCTACTCAGCCCCAAAGTGTTGGTGGCGGCGAGCATGAAGTTGT
GGTCGATGTTGGCCCTGCTCTCATCAAACCAGCGCCAGAACGTGGCCCGGCCTTTGTGGCAACCCACTTGGTTGCTAACG
AAGAAACCATCGCCGATATTGCTGCCAAATATACAATTACTCCAGAATCGTTGATTGCAGCCAATAATTTGACTGGCCCA
GTCGCGATCGGCGAAACCTTGCGAATTCCACGGGTTTCGGGGGTTCCACACACAGTCAGCGAAGGCGAAACGATCACCGA
TATCGCCGAACGCTACAGTGTTGGTGCTGATGTAATTATGACCTTCCCACCCAATGGCTTAGATCAGGGCCAAGCCTTGA
TTGCTGGACGCGAAATTTTCGTGCCTGGAGCATCGTTGGCGGGAGTGCAAAATGTTTCAGTGCGCGGCGCAATCGATTCA
ATCAATCAAAAATCACAAGCCGCCGCAATTGTGCTGGCTGATCGCACCAATTTGCGCGAAGGCCCAGGCACGGCCTACGA
GAAAATCGTCAAGGTCAATGCTGGCGAGCGTTTACAATTAATCGCCAAACACGAAGTTTGGGTCAAAATTCGCCAAAGTG
ATGGCGAAGTGGCCTGGGTTGCCCGCGAAGTTGTGAGCATCCCCGAGGAAGTTTGGTCGGCCTTGGAAGAGACCGATAAC
TTTCCGCCGCCGCCACCACCACCACCAGTTTGGGTTTGGCCAACCTATGGCGATTTGACCTCAGGTTTTGGCTATCGCAA
CTTTAGCGTTGGGCGGTTCCATAACGGCATCGATATTGCCAACCGCAAGGGCACGCCAATTTCAGCTGCCCGCCGTGGCA
CGGTGATCGAGGCTGGTTGGTGTAGCGGCTATGGCTATTGTGTCAAAATCAGCCATGGCTCTGGGATGGTCACCGAATAC
GGCCATATGATGTCGAATCCAGTGGTTTCCGAAGGCCAAGAGGTCGAGGCAGGCCAATTGATCGGCTATATGGGCAGCAC
CTATGATCGAGCTGGCGGTGGCTACTCAACGGGGGTTCACCTGCACTTCACCATCAAGGTCGATGGTACCGCAGTTAATC
CACTCAAGTACCTACCCTAA

Upstream 100 bases:

>100_bases
ATAACTGCGTGGGCTTGGCAACGCACATTCATGCCATAATGCATGCCGATAGCCGTGATTGCTATCAGCAACCAAGTTCC
ATTCGAGGAGTCTTCGTTCC

Downstream 100 bases:

>100_bases
TTCAGCCAACTGTTGAGCTAGCGCCAGTGCCAATCGCATTGGCGCTTTTTTTTGCCAACAATGGTCGTTTCAGCGTGCCG
TTGGATTCTCATTCATCGGC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MTEKRTPRRRVQRAQTQNNAEVILLPAPNHTTTAFRQKSDTGRIESLNRGGRSAQRRRKQEQRAASIARSSLAQIAGTPT
RAPQAISEPKQPRRSFKAAAQSVRQRLQLQRRLVAHSVILLAACVVAWGRGFPLNPVSDNATNQAIPEVLAAAQLVDEVE
AGNFQRVVIPISATQPQSVGGGEHEVVVDVGPALIKPAPERGPAFVATHLVANEETIADIAAKYTITPESLIAANNLTGP
VAIGETLRIPRVSGVPHTVSEGETITDIAERYSVGADVIMTFPPNGLDQGQALIAGREIFVPGASLAGVQNVSVRGAIDS
INQKSQAAAIVLADRTNLREGPGTAYEKIVKVNAGERLQLIAKHEVWVKIRQSDGEVAWVAREVVSIPEEVWSALEETDN
FPPPPPPPPVWVWPTYGDLTSGFGYRNFSVGRFHNGIDIANRKGTPISAARRGTVIEAGWCSGYGYCVKISHGSGMVTEY
GHMMSNPVVSEGQEVEAGQLIGYMGSTYDRAGGGYSTGVHLHFTIKVDGTAVNPLKYLP

Sequences:

>Translated_539_residues
MTEKRTPRRRVQRAQTQNNAEVILLPAPNHTTTAFRQKSDTGRIESLNRGGRSAQRRRKQEQRAASIARSSLAQIAGTPT
RAPQAISEPKQPRRSFKAAAQSVRQRLQLQRRLVAHSVILLAACVVAWGRGFPLNPVSDNATNQAIPEVLAAAQLVDEVE
AGNFQRVVIPISATQPQSVGGGEHEVVVDVGPALIKPAPERGPAFVATHLVANEETIADIAAKYTITPESLIAANNLTGP
VAIGETLRIPRVSGVPHTVSEGETITDIAERYSVGADVIMTFPPNGLDQGQALIAGREIFVPGASLAGVQNVSVRGAIDS
INQKSQAAAIVLADRTNLREGPGTAYEKIVKVNAGERLQLIAKHEVWVKIRQSDGEVAWVAREVVSIPEEVWSALEETDN
FPPPPPPPPVWVWPTYGDLTSGFGYRNFSVGRFHNGIDIANRKGTPISAARRGTVIEAGWCSGYGYCVKISHGSGMVTEY
GHMMSNPVVSEGQEVEAGQLIGYMGSTYDRAGGGYSTGVHLHFTIKVDGTAVNPLKYLP
>Mature_538_residues
TEKRTPRRRVQRAQTQNNAEVILLPAPNHTTTAFRQKSDTGRIESLNRGGRSAQRRRKQEQRAASIARSSLAQIAGTPTR
APQAISEPKQPRRSFKAAAQSVRQRLQLQRRLVAHSVILLAACVVAWGRGFPLNPVSDNATNQAIPEVLAAAQLVDEVEA
GNFQRVVIPISATQPQSVGGGEHEVVVDVGPALIKPAPERGPAFVATHLVANEETIADIAAKYTITPESLIAANNLTGPV
AIGETLRIPRVSGVPHTVSEGETITDIAERYSVGADVIMTFPPNGLDQGQALIAGREIFVPGASLAGVQNVSVRGAIDSI
NQKSQAAAIVLADRTNLREGPGTAYEKIVKVNAGERLQLIAKHEVWVKIRQSDGEVAWVAREVVSIPEEVWSALEETDNF
PPPPPPPPVWVWPTYGDLTSGFGYRNFSVGRFHNGIDIANRKGTPISAARRGTVIEAGWCSGYGYCVKISHGSGMVTEYG
HMMSNPVVSEGQEVEAGQLIGYMGSTYDRAGGGYSTGVHLHFTIKVDGTAVNPLKYLP

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=155, Percent_Identity=37.4193548387097, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789099, Length=130, Percent_Identity=42.3076923076923, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081989, Length=102, Percent_Identity=38.2352941176471, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=36.2204724409449, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 57908; Mature: 57777

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKRTPRRRVQRAQTQNNAEVILLPAPNHTTTAFRQKSDTGRIESLNRGGRSAQRRRKQ
CCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCCCHHHHHCCCHHHHHHHHH
EQRAASIARSSLAQIAGTPTRAPQAISEPKQPRRSFKAAAQSVRQRLQLQRRLVAHSVIL
HHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAACVVAWGRGFPLNPVSDNATNQAIPEVLAAAQLVDEVEAGNFQRVVIPISATQPQSVG
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC
GGEHEVVVDVGPALIKPAPERGPAFVATHLVANEETIADIAAKYTITPESLIAANNLTGP
CCCEEEEEECCHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHEEEECHHHHHCCCCCCCC
VAIGETLRIPRVSGVPHTVSEGETITDIAERYSVGADVIMTFPPNGLDQGQALIAGREIF
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCEEE
VPGASLAGVQNVSVRGAIDSINQKSQAAAIVLADRTNLREGPGTAYEKIVKVNAGERLQL
ECCCCCCCCCCEEEECHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHEEECCCCCEEEE
IAKHEVWVKIRQSDGEVAWVAREVVSIPEEVWSALEETDNFPPPPPPPPVWVWPTYGDLT
EEECEEEEEEECCCCCEEHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHH
SGFGYRNFSVGRFHNGIDIANRKGTPISAARRGTVIEAGWCSGYGYCVKISHGSGMVTEY
CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHCCCEEEECCCCCCEEEEEEECCCCCHHHH
GHMMSNPVVSEGQEVEAGQLIGYMGSTYDRAGGGYSTGVHLHFTIKVDGTAVNPLKYLP
HHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEECCCCCCC
>Mature Secondary Structure 
TEKRTPRRRVQRAQTQNNAEVILLPAPNHTTTAFRQKSDTGRIESLNRGGRSAQRRRKQ
CCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCCCHHHHHCCCHHHHHHHHH
EQRAASIARSSLAQIAGTPTRAPQAISEPKQPRRSFKAAAQSVRQRLQLQRRLVAHSVIL
HHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAACVVAWGRGFPLNPVSDNATNQAIPEVLAAAQLVDEVEAGNFQRVVIPISATQPQSVG
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC
GGEHEVVVDVGPALIKPAPERGPAFVATHLVANEETIADIAAKYTITPESLIAANNLTGP
CCCEEEEEECCHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHEEEECHHHHHCCCCCCCC
VAIGETLRIPRVSGVPHTVSEGETITDIAERYSVGADVIMTFPPNGLDQGQALIAGREIF
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCEEE
VPGASLAGVQNVSVRGAIDSINQKSQAAAIVLADRTNLREGPGTAYEKIVKVNAGERLQL
ECCCCCCCCCCEEEECHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHEEECCCCCEEEE
IAKHEVWVKIRQSDGEVAWVAREVVSIPEEVWSALEETDNFPPPPPPPPVWVWPTYGDLT
EEECEEEEEEECCCCCEEHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHH
SGFGYRNFSVGRFHNGIDIANRKGTPISAARRGTVIEAGWCSGYGYCVKISHGSGMVTEY
CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHCCCEEEECCCCCCEEEEEEECCCCCHHHH
GHMMSNPVVSEGQEVEAGQLIGYMGSTYDRAGGGYSTGVHLHFTIKVDGTAVNPLKYLP
HHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]