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The map label for this gene is yvrC [H]

Identifier: 159900411

GI number: 159900411

Start: 4888276

End: 4889067

Strand: Reverse

Name: yvrC [H]

Synonym: Haur_3896

Alternate gene names: 159900411

Gene position: 4889067-4888276 (Counterclockwise)

Preceding gene: 159900412

Following gene: 159900409

Centisome position: 77.03

GC content: 50.88

Gene sequence:

>792_bases
TTGTGGTACAACTCTTTGTTTGACATAACCGATGATCTAGGGCGTTTGCTGCACTTTGAGCATGTGCCACAACGAATTGT
TTCGTTGGTGCCAAGCTTGACCGAGTATCTATTTTGGTTGGGCTTGGCCGAGCAAATTGTGGGCATCACTGATTATTGTA
TTGTGCCTGCTGAACAAGTGGCAGCAGTGTCCAAAGTGCGCGGAACCAAAAATCCCAATCGTGAGCAAATTATTGGGCTG
GCTCCAGATTTGATTATCGCCAATAAGGAAGAAAATCGCCAGCGTGATATTGCAGCGCTCGAAGCAGCAGGCCTAACGAT
TTATGTGAGCGATATTGAAAGCGTGCAGCAAGCAATGCTTAGCTTGGCCAAATTGGCGGGCATCGTTGGACGAGCCGAAC
AAGCTGATTCGTTGATTGCGGCGATTCAGGCTGAACTTACGCGGAAGCCAACCACCCAACAACGGGTAGCCACAGCAATT
TGGCGCGACCCTTGGATGTGGGTTGGCCAAGCGACCTATGCCGCCGATTTATTGGCATGCTGCGGGGCTAGCAATTGTTT
GGCTGATCCAACGGGGCGCTATCCACGTTTGGAGTTGGCAGAGATTGCGGCCTTGCAACCAGATTGCATTTTACTGCCCG
ATGAACCCTATGCATTTAGCCAAGCCGATGCTGACGAATTGCAAGGCTTGGCGGCACAAATTACGTGCTGCGATGGCCAG
TTATTGACCTGGTATGGCCCGCGCATTCCCCTTGCCTTGCAAACCTATCGGCGTTTGTTGCAAGCTAAGTAA

Upstream 100 bases:

>100_bases
GCGCTGCGAGTATTATTTTCCAAGCCTTATGAAGAAACCTTTGTGAGTGTTGGTTATAGTCTGTTGCTTTATAATTTGAT
TCTGAGCTTTGTAACTTATA

Downstream 100 bases:

>100_bases
TCCTTAATTAGCGAGAGTTGCTTGCCGCGCTTTGGTCGTGGCAACCGCCTCGCGATATTCCTGACCCCAATCACGCATCA
AAAACAAAATTGGCCGCAAA

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MWYNSLFDITDDLGRLLHFEHVPQRIVSLVPSLTEYLFWLGLAEQIVGITDYCIVPAEQVAAVSKVRGTKNPNREQIIGL
APDLIIANKEENRQRDIAALEAAGLTIYVSDIESVQQAMLSLAKLAGIVGRAEQADSLIAAIQAELTRKPTTQQRVATAI
WRDPWMWVGQATYAADLLACCGASNCLADPTGRYPRLELAEIAALQPDCILLPDEPYAFSQADADELQGLAAQITCCDGQ
LLTWYGPRIPLALQTYRRLLQAK

Sequences:

>Translated_263_residues
MWYNSLFDITDDLGRLLHFEHVPQRIVSLVPSLTEYLFWLGLAEQIVGITDYCIVPAEQVAAVSKVRGTKNPNREQIIGL
APDLIIANKEENRQRDIAALEAAGLTIYVSDIESVQQAMLSLAKLAGIVGRAEQADSLIAAIQAELTRKPTTQQRVATAI
WRDPWMWVGQATYAADLLACCGASNCLADPTGRYPRLELAEIAALQPDCILLPDEPYAFSQADADELQGLAAQITCCDGQ
LLTWYGPRIPLALQTYRRLLQAK
>Mature_263_residues
MWYNSLFDITDDLGRLLHFEHVPQRIVSLVPSLTEYLFWLGLAEQIVGITDYCIVPAEQVAAVSKVRGTKNPNREQIIGL
APDLIIANKEENRQRDIAALEAAGLTIYVSDIESVQQAMLSLAKLAGIVGRAEQADSLIAAIQAELTRKPTTQQRVATAI
WRDPWMWVGQATYAADLLACCGASNCLADPTGRYPRLELAEIAALQPDCILLPDEPYAFSQADADELQGLAAQITCCDGQ
LLTWYGPRIPLALQTYRRLLQAK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=245, Percent_Identity=28.1632653061224, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 28995; Mature: 28995

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWYNSLFDITDDLGRLLHFEHVPQRIVSLVPSLTEYLFWLGLAEQIVGITDYCIVPAEQV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHH
AAVSKVRGTKNPNREQIIGLAPDLIIANKEENRQRDIAALEAAGLTIYVSDIESVQQAML
HHHHHHHCCCCCCHHHEEECCCCEEEECCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
SLAKLAGIVGRAEQADSLIAAIQAELTRKPTTQQRVATAIWRDPWMWVGQATYAADLLAC
HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCHHHHHHHHHHH
CGASNCLADPTGRYPRLELAEIAALQPDCILLPDEPYAFSQADADELQGLAAQITCCDGQ
HCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCHHHEEEECCCC
LLTWYGPRIPLALQTYRRLLQAK
EEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MWYNSLFDITDDLGRLLHFEHVPQRIVSLVPSLTEYLFWLGLAEQIVGITDYCIVPAEQV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHH
AAVSKVRGTKNPNREQIIGLAPDLIIANKEENRQRDIAALEAAGLTIYVSDIESVQQAML
HHHHHHHCCCCCCHHHEEECCCCEEEECCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
SLAKLAGIVGRAEQADSLIAAIQAELTRKPTTQQRVATAIWRDPWMWVGQATYAADLLAC
HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCHHHHHHHHHHH
CGASNCLADPTGRYPRLELAEIAALQPDCILLPDEPYAFSQADADELQGLAAQITCCDGQ
HCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCHHHEEEECCCC
LLTWYGPRIPLALQTYRRLLQAK
EEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]