Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900408

Identifier: 159900408

GI number: 159900408

Start: 4885625

End: 4886683

Strand: Reverse

Name: 159900408

Synonym: Haur_3893

Alternate gene names: NA

Gene position: 4886683-4885625 (Counterclockwise)

Preceding gene: 159900409

Following gene: 159900406

Centisome position: 77.0

GC content: 48.73

Gene sequence:

>1059_bases
ATGGCAACACGCTTTAGAGCCTCGCTACTCGGGATACTCTTGCTGGTTGGAATCGGTTTACAAGGCTGGGTTCGCCCGCA
AGCACCTAATGCGCCAACGGTGTTGAATGAGAATTTTGATTCATTCAACGATGTTTTGGCTGATGGTTGGGTGATTGTGA
ATGGTAGCGAACCACGTAATGATGACACTTCCGATCATAATCGTTGGAAACAAGGCCGTTCCAATGGTAACGATATGGAT
TCACACTCTGGTGCTAACAATTCCTATGCGGGTTCATCGTGGGAAGCTTCAACATTTGGTAGCAATTCAATTGTGAGTAA
TTGGCTGTTAACCCCACCATTATTACTTGAAAATGGTAAGACTGTCTCTTTTTGGACTCGATCGCTTGGTTGTTCAGGTG
GCCCTGATCGTTTAGATATTCGCTATAGTACTGCTGGAACGAGCACGAATGTCGCTAGTGGGAGTAATACTGGTGATTTC
TCAAACCAGCTTGGTCGAATCAACCCTGATCAGGAATTTGGTCATGATGCTGATGGCAGCGATGGCTATCCATGTAGCGA
CTGGGCGCAATTTAGTTATACGCTAAGCGGGATTAATCAACCAACCATCGGTCGGATTGGCTTCCGCCATTATATTGTCA
ATACAGCAAACCGTGGTCTGTATATTGGCATCGACGATTTTAGCTATTCGGGCGATTTGGGTGGCGGTACACCAACGCCA
ATTACCCATACCCCAACGGTGACCGCAACTAATACGGCTACCGCAACCAACACGCCAACCAGTACGCCAACCTCAACTAG
CACGCGCACGCCAACCAATACCGTGACCAACACGCCAACCAATACGCCAACTAATACCCGTACTCCAACCAATACCCCAA
CGGGTACGCCACCAACGCCAACCTTTACCCATACCCCAACTCGTACCCCAACCAACACGCCGACGAATACGCCAACCCGT
ACCCCAACCAACACCCCAACTCGCACGCCAACAGCAACCTCAGTGCCGCAAATTCCGGTGTATAAAGTCTTTATGTGCTT
GATTCAAAACGATGCCTAA

Upstream 100 bases:

>100_bases
AGCTACCTAGTACTAACTTCCCATTTCCATGTTGCAGATTGTTGAGTGTTTTCTTATACTTAGGACTATCTGCACTTATT
ATTTGGGAGGTCGATCGACA

Downstream 100 bases:

>100_bases
ACCTGATTAACGAAGAAACGCCCATGCGATCACAACGATCGCATGGGCGTTTTTGGTGAATTTAGGCTTTGATTTTGAGC
AATAATGTTTCATGGGGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MATRFRASLLGILLLVGIGLQGWVRPQAPNAPTVLNENFDSFNDVLADGWVIVNGSEPRNDDTSDHNRWKQGRSNGNDMD
SHSGANNSYAGSSWEASTFGSNSIVSNWLLTPPLLLENGKTVSFWTRSLGCSGGPDRLDIRYSTAGTSTNVASGSNTGDF
SNQLGRINPDQEFGHDADGSDGYPCSDWAQFSYTLSGINQPTIGRIGFRHYIVNTANRGLYIGIDDFSYSGDLGGGTPTP
ITHTPTVTATNTATATNTPTSTPTSTSTRTPTNTVTNTPTNTPTNTRTPTNTPTGTPPTPTFTHTPTRTPTNTPTNTPTR
TPTNTPTRTPTATSVPQIPVYKVFMCLIQNDA

Sequences:

>Translated_352_residues
MATRFRASLLGILLLVGIGLQGWVRPQAPNAPTVLNENFDSFNDVLADGWVIVNGSEPRNDDTSDHNRWKQGRSNGNDMD
SHSGANNSYAGSSWEASTFGSNSIVSNWLLTPPLLLENGKTVSFWTRSLGCSGGPDRLDIRYSTAGTSTNVASGSNTGDF
SNQLGRINPDQEFGHDADGSDGYPCSDWAQFSYTLSGINQPTIGRIGFRHYIVNTANRGLYIGIDDFSYSGDLGGGTPTP
ITHTPTVTATNTATATNTPTSTPTSTSTRTPTNTVTNTPTNTPTNTRTPTNTPTGTPPTPTFTHTPTRTPTNTPTNTPTR
TPTNTPTRTPTATSVPQIPVYKVFMCLIQNDA
>Mature_351_residues
ATRFRASLLGILLLVGIGLQGWVRPQAPNAPTVLNENFDSFNDVLADGWVIVNGSEPRNDDTSDHNRWKQGRSNGNDMDS
HSGANNSYAGSSWEASTFGSNSIVSNWLLTPPLLLENGKTVSFWTRSLGCSGGPDRLDIRYSTAGTSTNVASGSNTGDFS
NQLGRINPDQEFGHDADGSDGYPCSDWAQFSYTLSGINQPTIGRIGFRHYIVNTANRGLYIGIDDFSYSGDLGGGTPTPI
THTPTVTATNTATATNTPTSTPTSTSTRTPTNTVTNTPTNTPTNTRTPTNTPTGTPPTPTFTHTPTRTPTNTPTNTPTRT
PTNTPTRTPTATSVPQIPVYKVFMCLIQNDA

Specific function: Unknown

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37582; Mature: 37451

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRFRASLLGILLLVGIGLQGWVRPQAPNAPTVLNENFDSFNDVLADGWVIVNGSEPRN
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCEEEECCCCCCC
DDTSDHNRWKQGRSNGNDMDSHSGANNSYAGSSWEASTFGSNSIVSNWLLTPPLLLENGK
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCCC
TVSFWTRSLGCSGGPDRLDIRYSTAGTSTNVASGSNTGDFSNQLGRINPDQEFGHDADGS
EEEEEHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCCCCCCC
DGYPCSDWAQFSYTLSGINQPTIGRIGFRHYIVNTANRGLYIGIDDFSYSGDLGGGTPTP
CCCCCCCHHHEEEEECCCCCCCCHHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCCCC
ITHTPTVTATNTATATNTPTSTPTSTSTRTPTNTVTNTPTNTPTNTRTPTNTPTGTPPTP
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TFTHTPTRTPTNTPTNTPTRTPTNTPTRTPTATSVPQIPVYKVFMCLIQNDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATRFRASLLGILLLVGIGLQGWVRPQAPNAPTVLNENFDSFNDVLADGWVIVNGSEPRN
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCEEEECCCCCCC
DDTSDHNRWKQGRSNGNDMDSHSGANNSYAGSSWEASTFGSNSIVSNWLLTPPLLLENGK
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCCC
TVSFWTRSLGCSGGPDRLDIRYSTAGTSTNVASGSNTGDFSNQLGRINPDQEFGHDADGS
EEEEEHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCCCCCCC
DGYPCSDWAQFSYTLSGINQPTIGRIGFRHYIVNTANRGLYIGIDDFSYSGDLGGGTPTP
CCCCCCCHHHEEEEECCCCCCCCHHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCCCC
ITHTPTVTATNTATATNTPTSTPTSTSTRTPTNTVTNTPTNTPTNTRTPTNTPTGTPPTP
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TFTHTPTRTPTNTPTNTPTRTPTNTPTRTPTATSVPQIPVYKVFMCLIQNDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA