Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159900233

Identifier: 159900233

GI number: 159900233

Start: 4674206

End: 4675333

Strand: Reverse

Name: 159900233

Synonym: Haur_3716

Alternate gene names: NA

Gene position: 4675333-4674206 (Counterclockwise)

Preceding gene: 159900234

Following gene: 159900231

Centisome position: 73.67

GC content: 52.84

Gene sequence:

>1128_bases
ATGACAATTGTTGAGGGATTAATCAATCTTGGGGTGTTTTTGATCGGGCTGGTGATTGTGGCATTCACGCTATTTAGTGC
GATTCGCATGGTCGTGTTGCCACGCGGCGATAATGTTTGGCTGACGCGCACCACCTTTCGGCTGGTCTACGGCTGCTTTT
TGGTGCGTTTGCGCCGAATCAACAACTACGAACAAGCCGATCGGGTGCTGGCATTTTATGCGCCAGTGGCCTTGCTGATT
ATTCCAGTGGTTTGGATGGTGTTGGCAATTGCCGGCTTTACCTGTATGTTTTGGGCGGTTGGCGAGCATCCTTGGAGTAA
AGCATTTTTGCTGAGTGGCTCGTCGATGTTGACGCTGGGGTTTGCCGCAGTTGATTCAACGGTTGAAACAATTTTGGCCT
TTTTGGCGGCAACGGTTGGCTTAGGCATTGTGGCTTTGTTAATTGCCTATCTGCCAACGATGTACGGGGCTTTTTCCAAG
CGCGAAGAAGCCGTGACCTTGCTGGAAGTGCGGGCAGGCACGCCGCCATCGGCAATTACCATGATTCAGCGCTATCAGCG
GATTCATAATTTGGAGCGTATGCCTGAGCAATGGGCAATTTGGGAGCAATGGTTTGCCGAATTAGAGGAGAGCCATACCA
CCTTTGCGGCCTTGGCGTTTTTTCGTTCGCCCCAGCCGTATCGCTCGTGGATCACCGCTTCAGCGGCGGTGTTGGATTCC
GCAGCGTTGGCAGTTTCGACCCTTGATATCCCGCGCCAGCCAGATGCCGATTTGTGCATTCGGGCGGGCTATTTGGCGCT
GCGCCGCATCGCCGATTTGTATATGATTCCCTACAATGCCACGCCGCATGCCGATGATCCAATTAGCATCACGCGGGCTG
ATTTTGATCAGGCTTGTGCTGAATTGATCGCTAGTGGCGTGCCACTCAAAGCTGATCGCGACCAAGCATGGCGTGATTTT
GCTGGTTGGCGGGTCAATTACGATCAAGTGTTGATCGAATTAGCCAAATTGGTAACCGCCCCGCCAGCCCCTTGGACAGG
CGAACGTCCGCTGCCATTATGTTTCAACATGCCACGTTTTGGCCATAAACGCCGCCAACTAGCCAAAGAGCCAACTGGCT
CAATGTAA

Upstream 100 bases:

>100_bases
ATAACACGAAATGTTCCCAAGCCATTTTTGATTTTTGCCTTCTGACTTTATTCTTCAAGGTATACAATATCCCAAGGCAC
TTGCAAGCATCGAGGATACT

Downstream 100 bases:

>100_bases
CCCATATTCCCCTCATCCCCTAGCCCCTCTCCCGCAAGCGAGGCGAGGGAGAAGCGCTACGCATTATGGTAGAACCACGC
ATTTAAAGCCCCTCGCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MTIVEGLINLGVFLIGLVIVAFTLFSAIRMVVLPRGDNVWLTRTTFRLVYGCFLVRLRRINNYEQADRVLAFYAPVALLI
IPVVWMVLAIAGFTCMFWAVGEHPWSKAFLLSGSSMLTLGFAAVDSTVETILAFLAATVGLGIVALLIAYLPTMYGAFSK
REEAVTLLEVRAGTPPSAITMIQRYQRIHNLERMPEQWAIWEQWFAELEESHTTFAALAFFRSPQPYRSWITASAAVLDS
AALAVSTLDIPRQPDADLCIRAGYLALRRIADLYMIPYNATPHADDPISITRADFDQACAELIASGVPLKADRDQAWRDF
AGWRVNYDQVLIELAKLVTAPPAPWTGERPLPLCFNMPRFGHKRRQLAKEPTGSM

Sequences:

>Translated_375_residues
MTIVEGLINLGVFLIGLVIVAFTLFSAIRMVVLPRGDNVWLTRTTFRLVYGCFLVRLRRINNYEQADRVLAFYAPVALLI
IPVVWMVLAIAGFTCMFWAVGEHPWSKAFLLSGSSMLTLGFAAVDSTVETILAFLAATVGLGIVALLIAYLPTMYGAFSK
REEAVTLLEVRAGTPPSAITMIQRYQRIHNLERMPEQWAIWEQWFAELEESHTTFAALAFFRSPQPYRSWITASAAVLDS
AALAVSTLDIPRQPDADLCIRAGYLALRRIADLYMIPYNATPHADDPISITRADFDQACAELIASGVPLKADRDQAWRDF
AGWRVNYDQVLIELAKLVTAPPAPWTGERPLPLCFNMPRFGHKRRQLAKEPTGSM
>Mature_374_residues
TIVEGLINLGVFLIGLVIVAFTLFSAIRMVVLPRGDNVWLTRTTFRLVYGCFLVRLRRINNYEQADRVLAFYAPVALLII
PVVWMVLAIAGFTCMFWAVGEHPWSKAFLLSGSSMLTLGFAAVDSTVETILAFLAATVGLGIVALLIAYLPTMYGAFSKR
EEAVTLLEVRAGTPPSAITMIQRYQRIHNLERMPEQWAIWEQWFAELEESHTTFAALAFFRSPQPYRSWITASAAVLDSA
ALAVSTLDIPRQPDADLCIRAGYLALRRIADLYMIPYNATPHADDPISITRADFDQACAELIASGVPLKADRDQAWRDFA
GWRVNYDQVLIELAKLVTAPPAPWTGERPLPLCFNMPRFGHKRRQLAKEPTGSM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41885; Mature: 41754

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVEGLINLGVFLIGLVIVAFTLFSAIRMVVLPRGDNVWLTRTTFRLVYGCFLVRLRRI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEHHHHHHHHHHHHHHHHHH
NNYEQADRVLAFYAPVALLIIPVVWMVLAIAGFTCMFWAVGEHPWSKAFLLSGSSMLTLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH
FAAVDSTVETILAFLAATVGLGIVALLIAYLPTMYGAFSKREEAVTLLEVRAGTPPSAIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH
MIQRYQRIHNLERMPEQWAIWEQWFAELEESHTTFAALAFFRSPQPYRSWITASAAVLDS
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AALAVSTLDIPRQPDADLCIRAGYLALRRIADLYMIPYNATPHADDPISITRADFDQACA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEECCCHHHHHH
ELIASGVPLKADRDQAWRDFAGWRVNYDQVLIELAKLVTAPPAPWTGERPLPLCFNMPRF
HHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC
GHKRRQLAKEPTGSM
CHHHHHHHCCCCCCC
>Mature Secondary Structure 
TIVEGLINLGVFLIGLVIVAFTLFSAIRMVVLPRGDNVWLTRTTFRLVYGCFLVRLRRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEHHHHHHHHHHHHHHHHHH
NNYEQADRVLAFYAPVALLIIPVVWMVLAIAGFTCMFWAVGEHPWSKAFLLSGSSMLTLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH
FAAVDSTVETILAFLAATVGLGIVALLIAYLPTMYGAFSKREEAVTLLEVRAGTPPSAIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH
MIQRYQRIHNLERMPEQWAIWEQWFAELEESHTTFAALAFFRSPQPYRSWITASAAVLDS
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AALAVSTLDIPRQPDADLCIRAGYLALRRIADLYMIPYNATPHADDPISITRADFDQACA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEECCCHHHHHH
ELIASGVPLKADRDQAWRDFAGWRVNYDQVLIELAKLVTAPPAPWTGERPLPLCFNMPRF
HHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC
GHKRRQLAKEPTGSM
CHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA