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The map label for this gene is yfdE [H]

Identifier: 159900138

GI number: 159900138

Start: 4551188

End: 4552354

Strand: Reverse

Name: yfdE [H]

Synonym: Haur_3621

Alternate gene names: 159900138

Gene position: 4552354-4551188 (Counterclockwise)

Preceding gene: 159900139

Following gene: 159900136

Centisome position: 71.73

GC content: 54.16

Gene sequence:

>1167_bases
ATGCTGAGTTCTCCGCTCGATGGCCTGCTCGTGCTCGACCTCTCACGGGTGCTGGCAGGCCCATATTGCACCATGATTCT
TGGCGATCTTGGGGCTGATGTGATTAAAGTTGAAGCGCCGCAAGGCGATGATACCCGCCGCTGGGGGCCGCCGTTTGTTG
CTGGCGAGAGCGCCTACTATTTGGCGGTCAATCGCAATAAACGCTCATTGGTCGCCGATCTCAAAACTGCCACTGATGCT
GCGTTGATTCGCACAATCGCCAACCACTCCGATATTGTGGTTGAGAACTTTCGGCCTGGCACGCTCGAACGCTTTGGCTT
GAGTTTAGCCAGCCTGCGCGAGCAAAATCCCCGTTTGATCACGCTCACAATCAGCGGAATGGGCGCGACTGGGCCTGAAG
CTGAGCTGCCAGGCTATGATTTTATTGTGCAAGCGACTGCAGGTTTGATGAGCATTACCGGACCCGCCGAGGGCGAGGCC
AGCAAAGTTGGAGTTGCTGTCGTCGATTTGACGACTGGAATGTTGGCGAGCAACGCGATTTTGGCGGCGTTGTATGCCCG
AGAACGCACAGGTTTGGGGCAGCATATTGATATTTCGCTGTTAGAAGCCCAAGTTGCTTGGTTGGCGAATGTTGGCAGTG
CCTATTTGGTAACTGGCGAGGAGCCAAACCGCTATGGTAATGCTCACCCTACGATTGTGCCCTATCAAACCTTTGAGGCC
AGCGATGGCGCGTTTGCCTTGGCCGTCGGCAATGATCGCCAATGGCAACAGTTATGTGCTGTTTTGCAACAACCAGCTTG
GGCGGAAGATCCACGCTTTAGCACCAACCCGCAACGAGTGCAGTACCGCAGCGCATTGGTTGATTTGCTGAATCACCAGT
TCGGCCAAAAACCAAGCGCCGAGTGGGTGGCGTTAATTCAGGCGGCGGGCATTCCGGTGGGCGCAGTGCGCAGCGTTGGT
CAAGTGTTGAACGACCCGCAGGTGTTGGCACGTGAAATGGTGGTCAGTGTGCCACACCCAACGATTGGTGATTTAAAAGT
CTTGGGAATTCCGTTTAAATTCTCGGCAACACCCGCGAGTATTCGTTTGGCCCCACCACTACTGGGACAACATAGCCAAG
AAATTCACCAACAATTTAACCCAAAAGTACCATCTAAAACCGACTGA

Upstream 100 bases:

>100_bases
CTGGTGGCGCACAATTTGCTCAAAACAATTCATCATTGTATCGTTGTGGCGAATAATTCGCCTGAGGAAGTTACTTCCTT
CTAGTTAACGGTACTGCTCA

Downstream 100 bases:

>100_bases
TTTAATTGCAACCCCGCCATGACTCTGCTAAAGTTGCTAGTACCGATAGCTGTTAGGATCTTTGATGCTGGACGAACGCT
TGTTTGCTGGTTTCGGGCTA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MLSSPLDGLLVLDLSRVLAGPYCTMILGDLGADVIKVEAPQGDDTRRWGPPFVAGESAYYLAVNRNKRSLVADLKTATDA
ALIRTIANHSDIVVENFRPGTLERFGLSLASLREQNPRLITLTISGMGATGPEAELPGYDFIVQATAGLMSITGPAEGEA
SKVGVAVVDLTTGMLASNAILAALYARERTGLGQHIDISLLEAQVAWLANVGSAYLVTGEEPNRYGNAHPTIVPYQTFEA
SDGAFALAVGNDRQWQQLCAVLQQPAWAEDPRFSTNPQRVQYRSALVDLLNHQFGQKPSAEWVALIQAAGIPVGAVRSVG
QVLNDPQVLAREMVVSVPHPTIGDLKVLGIPFKFSATPASIRLAPPLLGQHSQEIHQQFNPKVPSKTD

Sequences:

>Translated_388_residues
MLSSPLDGLLVLDLSRVLAGPYCTMILGDLGADVIKVEAPQGDDTRRWGPPFVAGESAYYLAVNRNKRSLVADLKTATDA
ALIRTIANHSDIVVENFRPGTLERFGLSLASLREQNPRLITLTISGMGATGPEAELPGYDFIVQATAGLMSITGPAEGEA
SKVGVAVVDLTTGMLASNAILAALYARERTGLGQHIDISLLEAQVAWLANVGSAYLVTGEEPNRYGNAHPTIVPYQTFEA
SDGAFALAVGNDRQWQQLCAVLQQPAWAEDPRFSTNPQRVQYRSALVDLLNHQFGQKPSAEWVALIQAAGIPVGAVRSVG
QVLNDPQVLAREMVVSVPHPTIGDLKVLGIPFKFSATPASIRLAPPLLGQHSQEIHQQFNPKVPSKTD
>Mature_388_residues
MLSSPLDGLLVLDLSRVLAGPYCTMILGDLGADVIKVEAPQGDDTRRWGPPFVAGESAYYLAVNRNKRSLVADLKTATDA
ALIRTIANHSDIVVENFRPGTLERFGLSLASLREQNPRLITLTISGMGATGPEAELPGYDFIVQATAGLMSITGPAEGEA
SKVGVAVVDLTTGMLASNAILAALYARERTGLGQHIDISLLEAQVAWLANVGSAYLVTGEEPNRYGNAHPTIVPYQTFEA
SDGAFALAVGNDRQWQQLCAVLQQPAWAEDPRFSTNPQRVQYRSALVDLLNHQFGQKPSAEWVALIQAAGIPVGAVRSVG
QVLNDPQVLAREMVVSVPHPTIGDLKVLGIPFKFSATPASIRLAPPLLGQHSQEIHQQFNPKVPSKTD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=376, Percent_Identity=42.5531914893617, Blast_Score=334, Evalue=8e-92,
Organism=Homo sapiens, GI300863124, Length=402, Percent_Identity=39.8009950248756, Blast_Score=320, Evalue=2e-87,
Organism=Homo sapiens, GI13376042, Length=402, Percent_Identity=36.5671641791045, Blast_Score=278, Evalue=5e-75,
Organism=Homo sapiens, GI300863126, Length=376, Percent_Identity=36.968085106383, Blast_Score=275, Evalue=5e-74,
Organism=Homo sapiens, GI42794625, Length=385, Percent_Identity=28.051948051948, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI266456254, Length=385, Percent_Identity=28.051948051948, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI266458393, Length=248, Percent_Identity=33.0645161290323, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=33.0645161290323, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=37.5, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=36.3636363636364, Blast_Score=93, Evalue=5e-19,
Organism=Escherichia coli, GI87082093, Length=379, Percent_Identity=38.5224274406332, Blast_Score=281, Evalue=6e-77,
Organism=Escherichia coli, GI1788717, Length=402, Percent_Identity=31.592039800995, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI1786222, Length=382, Percent_Identity=24.3455497382199, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=28.5294117647059, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=326, Percent_Identity=26.9938650306748, Blast_Score=98, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24648431, Length=374, Percent_Identity=48.1283422459893, Blast_Score=352, Evalue=2e-97,
Organism=Drosophila melanogaster, GI24585488, Length=322, Percent_Identity=27.639751552795, Blast_Score=99, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41526; Mature: 41526

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSPLDGLLVLDLSRVLAGPYCTMILGDLGADVIKVEAPQGDDTRRWGPPFVAGESAYY
CCCCCCCCHHHEEHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCEEE
LAVNRNKRSLVADLKTATDAALIRTIANHSDIVVENFRPGTLERFGLSLASLREQNPRLI
EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHCCCCCEE
TLTISGMGATGPEAELPGYDFIVQATAGLMSITGPAEGEASKVGVAVVDLTTGMLASNAI
EEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHH
LAALYARERTGLGQHIDISLLEAQVAWLANVGSAYLVTGEEPNRYGNAHPTIVPYQTFEA
HHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEEC
SDGAFALAVGNDRQWQQLCAVLQQPAWAEDPRFSTNPQRVQYRSALVDLLNHQFGQKPSA
CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
EWVALIQAAGIPVGAVRSVGQVLNDPQVLAREMVVSVPHPTIGDLKVLGIPFKFSATPAS
HHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEECEEECCCCCE
IRLAPPLLGQHSQEIHQQFNPKVPSKTD
EEECCCCCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLSSPLDGLLVLDLSRVLAGPYCTMILGDLGADVIKVEAPQGDDTRRWGPPFVAGESAYY
CCCCCCCCHHHEEHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCEEE
LAVNRNKRSLVADLKTATDAALIRTIANHSDIVVENFRPGTLERFGLSLASLREQNPRLI
EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHCCCCCEE
TLTISGMGATGPEAELPGYDFIVQATAGLMSITGPAEGEASKVGVAVVDLTTGMLASNAI
EEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHH
LAALYARERTGLGQHIDISLLEAQVAWLANVGSAYLVTGEEPNRYGNAHPTIVPYQTFEA
HHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEEC
SDGAFALAVGNDRQWQQLCAVLQQPAWAEDPRFSTNPQRVQYRSALVDLLNHQFGQKPSA
CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
EWVALIQAAGIPVGAVRSVGQVLNDPQVLAREMVVSVPHPTIGDLKVLGIPFKFSATPAS
HHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEECEEECCCCCE
IRLAPPLLGQHSQEIHQQFNPKVPSKTD
EEECCCCCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]