Click here to switch to the map view.

The map label for this gene is yngJ [H]

Identifier: 159900084

GI number: 159900084

Start: 4484525

End: 4485673

Strand: Direct

Name: yngJ [H]

Synonym: Haur_3567

Alternate gene names: 159900084

Gene position: 4484525-4485673 (Clockwise)

Preceding gene: 159900083

Following gene: 159900090

Centisome position: 70.66

GC content: 54.66

Gene sequence:

>1149_bases
ATGGATTTCCAGTTAACCCAAGAACAGCAAGAGTTACGTCAGAGTGTGCGTGAATTTGCTGAGCGCGAGTTATTGCCCAA
AGCCAAAGACGTTGATGAAAAAGCCCAAATTCCAGCCTCGACCTGGCAAAAAATGGCCGATATGGGTTTGATGGGCTTGC
CTTTTGCCGAAGAATTGGGCGGCGCAGGAGCCGATGCGATTAGCGCAGCGCTGGCAGTCGAAGAAATTGCCCGCTGTTGT
GGCTCGACGGCGCTTTCCTATGCAGCCCATGTTGGTTTGGGCAGCGCCCCCATCGCGATGTTTGGCAACGATCAACAAAA
AGAGCAATTTCTGCGGCCCGCCGCTGAAGGTCGTTACCTTGGAGCATTTGGCCTGACCGAGCCGCATGCTGGCTCCGATG
CTGGCTCAACCCGCACCACCGCCGTGCGCGATGGCAACGAATGGGTGATCAACGGCGCAAAAATGTGGATCACCAATGCC
GCCGAAGCCGGCCACCTGATCGCTACCGCCATTACCAATAAAGATCGTGGCAAGCGTGGCATCAGCGCGATTATCATTCC
TAAAGGTACGCCAGGCGTACATTTTGGCAGCCCTGAGCACAAAATGGGCTTACGTGGCTCGAATACCCACGCCATCACCT
TTGATAATGTGCGGGTTCCGCTAGAAAATCTGCTGGGTGCTGAGGGCGATGGCTTTGTGCAATTTCTCAAAGTGCTCGAT
GGCGGACGGATTTCGATCGGGGCAATGGCGATTGGTTTAGGCGTGGCCGCGATGGAAGCTGCGGTCAGCTATGCCCGTGA
GCGTCAAGCCTTTGGTCATGCGATTGGCAGCTATCAATCGATCAGTAATATGTTGGCCGATATGGATACCGAGCTAGAGG
CAGCTCGTTTGCTGATTTTACGCGCCGCATGGCTCAAAGAAAACGGCAAACCATTCACCCGCGAAGCAGCGATTGCCAAA
CTCTATGCCTCGGAAGCCTCAGAACGCGCCTGCCGCAACGCTGTCCAAATCTTTGGCGGCTACGGCTATAGCAGCGAATA
TCCGGTTGAGCGCTACTATCGCGACACGCGTTTGCTGACGATTGGCGAAGGCACATCGGAGATTCTGCGCATGGTCATCT
CACGTGGTTTACTTGGCGAATTAGCCTAA

Upstream 100 bases:

>100_bases
TTGCTTTCATCCCTCATAATTCATCCTTCATCCTTCCGACAACTTCTTGGTATACTACAATGAGGCAACGAAGCCGACCA
AATCATAGGAGATATGCTCA

Downstream 100 bases:

>100_bases
TTCGCTGGAATTAATCATTAAATAGTTAATCGTAAAAAGCACCTCAATCGTAATTGATTGAAGTGCTTTTTAATTGAATG
CTAGAATATTTAGCGCTTAC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MDFQLTQEQQELRQSVREFAERELLPKAKDVDEKAQIPASTWQKMADMGLMGLPFAEELGGAGADAISAALAVEEIARCC
GSTALSYAAHVGLGSAPIAMFGNDQQKEQFLRPAAEGRYLGAFGLTEPHAGSDAGSTRTTAVRDGNEWVINGAKMWITNA
AEAGHLIATAITNKDRGKRGISAIIIPKGTPGVHFGSPEHKMGLRGSNTHAITFDNVRVPLENLLGAEGDGFVQFLKVLD
GGRISIGAMAIGLGVAAMEAAVSYARERQAFGHAIGSYQSISNMLADMDTELEAARLLILRAAWLKENGKPFTREAAIAK
LYASEASERACRNAVQIFGGYGYSSEYPVERYYRDTRLLTIGEGTSEILRMVISRGLLGELA

Sequences:

>Translated_382_residues
MDFQLTQEQQELRQSVREFAERELLPKAKDVDEKAQIPASTWQKMADMGLMGLPFAEELGGAGADAISAALAVEEIARCC
GSTALSYAAHVGLGSAPIAMFGNDQQKEQFLRPAAEGRYLGAFGLTEPHAGSDAGSTRTTAVRDGNEWVINGAKMWITNA
AEAGHLIATAITNKDRGKRGISAIIIPKGTPGVHFGSPEHKMGLRGSNTHAITFDNVRVPLENLLGAEGDGFVQFLKVLD
GGRISIGAMAIGLGVAAMEAAVSYARERQAFGHAIGSYQSISNMLADMDTELEAARLLILRAAWLKENGKPFTREAAIAK
LYASEASERACRNAVQIFGGYGYSSEYPVERYYRDTRLLTIGEGTSEILRMVISRGLLGELA
>Mature_382_residues
MDFQLTQEQQELRQSVREFAERELLPKAKDVDEKAQIPASTWQKMADMGLMGLPFAEELGGAGADAISAALAVEEIARCC
GSTALSYAAHVGLGSAPIAMFGNDQQKEQFLRPAAEGRYLGAFGLTEPHAGSDAGSTRTTAVRDGNEWVINGAKMWITNA
AEAGHLIATAITNKDRGKRGISAIIIPKGTPGVHFGSPEHKMGLRGSNTHAITFDNVRVPLENLLGAEGDGFVQFLKVLD
GGRISIGAMAIGLGVAAMEAAVSYARERQAFGHAIGSYQSISNMLADMDTELEAARLLILRAAWLKENGKPFTREAAIAK
LYASEASERACRNAVQIFGGYGYSSEYPVERYYRDTRLLTIGEGTSEILRMVISRGLLGELA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=375, Percent_Identity=46.1333333333333, Blast_Score=334, Evalue=8e-92,
Organism=Homo sapiens, GI4501859, Length=376, Percent_Identity=37.5, Blast_Score=271, Evalue=8e-73,
Organism=Homo sapiens, GI187960098, Length=378, Percent_Identity=37.037037037037, Blast_Score=262, Evalue=4e-70,
Organism=Homo sapiens, GI4557231, Length=378, Percent_Identity=37.037037037037, Blast_Score=262, Evalue=4e-70,
Organism=Homo sapiens, GI226958412, Length=377, Percent_Identity=35.2785145888594, Blast_Score=258, Evalue=9e-69,
Organism=Homo sapiens, GI7656849, Length=377, Percent_Identity=35.5437665782493, Blast_Score=247, Evalue=2e-65,
Organism=Homo sapiens, GI226958414, Length=336, Percent_Identity=36.0119047619048, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI21361497, Length=379, Percent_Identity=36.9393139841689, Blast_Score=229, Evalue=2e-60,
Organism=Homo sapiens, GI4501857, Length=378, Percent_Identity=32.5396825396825, Blast_Score=227, Evalue=2e-59,
Organism=Homo sapiens, GI76496475, Length=377, Percent_Identity=35.5437665782493, Blast_Score=211, Evalue=6e-55,
Organism=Homo sapiens, GI4557235, Length=377, Percent_Identity=35.5437665782493, Blast_Score=211, Evalue=7e-55,
Organism=Homo sapiens, GI4503943, Length=383, Percent_Identity=28.4595300261097, Blast_Score=142, Evalue=6e-34,
Organism=Homo sapiens, GI38505218, Length=398, Percent_Identity=29.3969849246231, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI7669494, Length=356, Percent_Identity=28.9325842696629, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI48976061, Length=397, Percent_Identity=27.9596977329975, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI211971008, Length=397, Percent_Identity=27.9596977329975, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI218563752, Length=256, Percent_Identity=26.953125, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI87081958, Length=387, Percent_Identity=32.8165374677003, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1786223, Length=381, Percent_Identity=28.3464566929134, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI87081702, Length=362, Percent_Identity=26.5193370165746, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI87082384, Length=287, Percent_Identity=25.0871080139373, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17570075, Length=385, Percent_Identity=37.9220779220779, Blast_Score=278, Evalue=5e-75,
Organism=Caenorhabditis elegans, GI17508101, Length=372, Percent_Identity=36.8279569892473, Blast_Score=271, Evalue=5e-73,
Organism=Caenorhabditis elegans, GI17538396, Length=382, Percent_Identity=36.9109947643979, Blast_Score=267, Evalue=8e-72,
Organism=Caenorhabditis elegans, GI17569725, Length=385, Percent_Identity=37.6623376623377, Blast_Score=264, Evalue=6e-71,
Organism=Caenorhabditis elegans, GI17534899, Length=385, Percent_Identity=36.6233766233766, Blast_Score=256, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI17506239, Length=380, Percent_Identity=35.2631578947368, Blast_Score=245, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI17533517, Length=376, Percent_Identity=32.9787234042553, Blast_Score=230, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI71990804, Length=319, Percent_Identity=36.6771159874608, Blast_Score=216, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI71985184, Length=386, Percent_Identity=34.4559585492228, Blast_Score=207, Evalue=9e-54,
Organism=Caenorhabditis elegans, GI17505929, Length=367, Percent_Identity=31.3351498637602, Blast_Score=192, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI17551932, Length=369, Percent_Identity=30.6233062330623, Blast_Score=183, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17534353, Length=378, Percent_Identity=29.1005291005291, Blast_Score=169, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI71985192, Length=333, Percent_Identity=33.6336336336336, Blast_Score=165, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI71982178, Length=269, Percent_Identity=31.2267657992565, Blast_Score=159, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI32563615, Length=235, Percent_Identity=35.3191489361702, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17531909, Length=244, Percent_Identity=28.6885245901639, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17562446, Length=390, Percent_Identity=27.1794871794872, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17531913, Length=180, Percent_Identity=29.4444444444444, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI86563381, Length=278, Percent_Identity=25.5395683453237, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI86563383, Length=278, Percent_Identity=25.5395683453237, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356377, Length=378, Percent_Identity=45.5026455026455, Blast_Score=334, Evalue=7e-92,
Organism=Drosophila melanogaster, GI24646207, Length=378, Percent_Identity=43.1216931216931, Blast_Score=306, Evalue=2e-83,
Organism=Drosophila melanogaster, GI24666513, Length=378, Percent_Identity=39.1534391534392, Blast_Score=284, Evalue=7e-77,
Organism=Drosophila melanogaster, GI24660351, Length=378, Percent_Identity=38.0952380952381, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI21355753, Length=379, Percent_Identity=34.8284960422164, Blast_Score=231, Evalue=6e-61,
Organism=Drosophila melanogaster, GI281363737, Length=385, Percent_Identity=35.3246753246753, Blast_Score=219, Evalue=2e-57,
Organism=Drosophila melanogaster, GI19920834, Length=383, Percent_Identity=28.4595300261097, Blast_Score=144, Evalue=7e-35,
Organism=Drosophila melanogaster, GI281365206, Length=280, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24585193, Length=280, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24585195, Length=280, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24585191, Length=280, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40985; Mature: 40985

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFQLTQEQQELRQSVREFAERELLPKAKDVDEKAQIPASTWQKMADMGLMGLPFAEELG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCHHHHC
GAGADAISAALAVEEIARCCGSTALSYAAHVGLGSAPIAMFGNDQQKEQFLRPAAEGRYL
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHCHHHCCCEE
GAFGLTEPHAGSDAGSTRTTAVRDGNEWVINGAKMWITNAAEAGHLIATAITNKDRGKRG
EECCCCCCCCCCCCCCCCEEEEECCCEEEEECEEEEEECCCCCCCEEEEEECCCCCCCCC
ISAIIIPKGTPGVHFGSPEHKMGLRGSNTHAITFDNVRVPLENLLGAEGDGFVQFLKVLD
CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCHHHHHHHHHC
GGRISIGAMAIGLGVAAMEAAVSYARERQAFGHAIGSYQSISNMLADMDTELEAARLLIL
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RAAWLKENGKPFTREAAIAKLYASEASERACRNAVQIFGGYGYSSEYPVERYYRDTRLLT
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEE
IGEGTSEILRMVISRGLLGELA
ECCCHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MDFQLTQEQQELRQSVREFAERELLPKAKDVDEKAQIPASTWQKMADMGLMGLPFAEELG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCHHHHC
GAGADAISAALAVEEIARCCGSTALSYAAHVGLGSAPIAMFGNDQQKEQFLRPAAEGRYL
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHCHHHCCCEE
GAFGLTEPHAGSDAGSTRTTAVRDGNEWVINGAKMWITNAAEAGHLIATAITNKDRGKRG
EECCCCCCCCCCCCCCCCEEEEECCCEEEEECEEEEEECCCCCCCEEEEEECCCCCCCCC
ISAIIIPKGTPGVHFGSPEHKMGLRGSNTHAITFDNVRVPLENLLGAEGDGFVQFLKVLD
CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCHHHHHHHHHC
GGRISIGAMAIGLGVAAMEAAVSYARERQAFGHAIGSYQSISNMLADMDTELEAARLLIL
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RAAWLKENGKPFTREAAIAKLYASEASERACRNAVQIFGGYGYSSEYPVERYYRDTRLLT
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEE
IGEGTSEILRMVISRGLLGELA
ECCCHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]