| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159900071
Identifier: 159900071
GI number: 159900071
Start: 4470437
End: 4471396
Strand: Reverse
Name: 159900071
Synonym: Haur_3554
Alternate gene names: NA
Gene position: 4471396-4470437 (Counterclockwise)
Preceding gene: 159900072
Following gene: 159900070
Centisome position: 70.45
GC content: 51.77
Gene sequence:
>960_bases ATGATCAAACGTGGCTTGATCTATTTGGCGTGGCTGGGCGTTGTGCCATGCAGTTTGTGGTCGCTTTTACGCTGGACTGC GCTGGCAACTACACCGCAAGGTATGGTATTGCTGGTGTTTGATGCCTGGGTGTATGCCAGTTTATTGCCGATTGCGCTGC TGGCGGTTAGTTTGCGTCGCAATTATTTGCTGGGCGTGCTCGGCTTGAATATGCTGGTAGTTTTGGGCTTATATGGCGGG CGTTGGCTACCCCAATCAGCGAATTCGACCCCCCAAGATTTGCGGATTATGACCTGGAATGTGTTTTACAATACCCAAGA TATTGCTGGCTTGGCGGCGACAATTCGTCAGCAACAGCCGGATATTGTAGTTTTGCAGGAATATAATTTTCAGCTTGACC CGCAACTCCCCGAAGCCTTGGAAGATTTGTACCCTTATGCCGCGCTTGATCCCCATTCGGGCGCTGGTGGTTTGGCGACG CTTAGCCGCTGGCCGCTGCGCGAGTTGGCTCCGGTTGCGCGTGGTGTTGATAGTTGTGGCTGCCAATATTTGGAGATTGC CACTCCAAACGGCCCAACCCGCCTGATCAACACCCATCCGCATATTCCGCTGGCCAGTTTCAAGGGCATTTATACCAAAA CCCAGCAAGACCCAACCTTCGATCATTTGCTGAAATTGATTGCTGACCAAAGCCAACCCTTAATTTTGGCAGGCGATTTG AATACGACTGAACGCCAGCCCAATTATTTACGTTTACGTCAACAGCTTGGCGATGCCTACCAACAACAAGGCTGGGGTTT GGGCTATACCTTTCCGAGCAATGGCGCTATTCCCAAAGCGGTGCGTTTGGATTATATTATGCCCAACGCCCATTGGCAGC CCTTGCGGGCTTGGAATGGCACGGCTAATTTGTCGGATCACGGCTTTGTGGTCGCCGATTTGCAGCGTTTAGCCGAATAG
Upstream 100 bases:
>100_bases TTTAGTTTGCAGCATGATGAATTTTTGGTTGGTCGTGATGATTAATTGATAATTTGACGATCAATGAACCTCAAGCTTGT AGAGTAAGGGAGAATTCGTG
Downstream 100 bases:
>100_bases TTTGAGGGTTAAGACGTATGACGGTTTATAAGTCTGCTGCTACAAAATATGCAGTTCCGTTTGTGGTTATTTTAGTTGTG GCAACAGTTATCCTTGTCAG
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Integral Membrane Protein; Endonuclease/Exonuclease/Phosphatase Family
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MIKRGLIYLAWLGVVPCSLWSLLRWTALATTPQGMVLLVFDAWVYASLLPIALLAVSLRRNYLLGVLGLNMLVVLGLYGG RWLPQSANSTPQDLRIMTWNVFYNTQDIAGLAATIRQQQPDIVVLQEYNFQLDPQLPEALEDLYPYAALDPHSGAGGLAT LSRWPLRELAPVARGVDSCGCQYLEIATPNGPTRLINTHPHIPLASFKGIYTKTQQDPTFDHLLKLIADQSQPLILAGDL NTTERQPNYLRLRQQLGDAYQQQGWGLGYTFPSNGAIPKAVRLDYIMPNAHWQPLRAWNGTANLSDHGFVVADLQRLAE
Sequences:
>Translated_319_residues MIKRGLIYLAWLGVVPCSLWSLLRWTALATTPQGMVLLVFDAWVYASLLPIALLAVSLRRNYLLGVLGLNMLVVLGLYGG RWLPQSANSTPQDLRIMTWNVFYNTQDIAGLAATIRQQQPDIVVLQEYNFQLDPQLPEALEDLYPYAALDPHSGAGGLAT LSRWPLRELAPVARGVDSCGCQYLEIATPNGPTRLINTHPHIPLASFKGIYTKTQQDPTFDHLLKLIADQSQPLILAGDL NTTERQPNYLRLRQQLGDAYQQQGWGLGYTFPSNGAIPKAVRLDYIMPNAHWQPLRAWNGTANLSDHGFVVADLQRLAE >Mature_319_residues MIKRGLIYLAWLGVVPCSLWSLLRWTALATTPQGMVLLVFDAWVYASLLPIALLAVSLRRNYLLGVLGLNMLVVLGLYGG RWLPQSANSTPQDLRIMTWNVFYNTQDIAGLAATIRQQQPDIVVLQEYNFQLDPQLPEALEDLYPYAALDPHSGAGGLAT LSRWPLRELAPVARGVDSCGCQYLEIATPNGPTRLINTHPHIPLASFKGIYTKTQQDPTFDHLLKLIADQSQPLILAGDL NTTERQPNYLRLRQQLGDAYQQQGWGLGYTFPSNGAIPKAVRLDYIMPNAHWQPLRAWNGTANLSDHGFVVADLQRLAE
Specific function: Unknown
COG id: COG3021
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35523; Mature: 35523
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKRGLIYLAWLGVVPCSLWSLLRWTALATTPQGMVLLVFDAWVYASLLPIALLAVSLRR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH NYLLGVLGLNMLVVLGLYGGRWLPQSANSTPQDLRIMTWNVFYNTQDIAGLAATIRQQQP HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCC DIVVLQEYNFQLDPQLPEALEDLYPYAALDPHSGAGGLATLSRWPLRELAPVARGVDSCG CEEEEEECCCEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCHHHCC CQYLEIATPNGPTRLINTHPHIPLASFKGIYTKTQQDPTFDHLLKLIADQSQPLILAGDL CEEEEEECCCCCEEEECCCCCCCHHHCCCCEECCCCCCCHHHHHHHHHCCCCCEEEECCC NTTERQPNYLRLRQQLGDAYQQQGWGLGYTFPSNGAIPKAVRLDYIMPNAHWQPLRAWNG CCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCHHHCCC TANLSDHGFVVADLQRLAE CCCCCCCCCHHHHHHHHCC >Mature Secondary Structure MIKRGLIYLAWLGVVPCSLWSLLRWTALATTPQGMVLLVFDAWVYASLLPIALLAVSLRR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH NYLLGVLGLNMLVVLGLYGGRWLPQSANSTPQDLRIMTWNVFYNTQDIAGLAATIRQQQP HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCC DIVVLQEYNFQLDPQLPEALEDLYPYAALDPHSGAGGLATLSRWPLRELAPVARGVDSCG CEEEEEECCCEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCHHHCC CQYLEIATPNGPTRLINTHPHIPLASFKGIYTKTQQDPTFDHLLKLIADQSQPLILAGDL CEEEEEECCCCCEEEECCCCCCCHHHCCCCEECCCCCCCHHHHHHHHHCCCCCEEEECCC NTTERQPNYLRLRQQLGDAYQQQGWGLGYTFPSNGAIPKAVRLDYIMPNAHWQPLRAWNG CCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCHHHCCC TANLSDHGFVVADLQRLAE CCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA