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The map label for this gene is 159899946

Identifier: 159899946

GI number: 159899946

Start: 4318711

End: 4319316

Strand: Reverse

Name: 159899946

Synonym: Haur_3429

Alternate gene names: NA

Gene position: 4319316-4318711 (Counterclockwise)

Preceding gene: 159899947

Following gene: 159899945

Centisome position: 68.06

GC content: 48.18

Gene sequence:

>606_bases
ATGAAATACGCTCATTGGCTGTTTGGCTGTGTGCTGCTAGGGCTTGTCTTGAGTTTAAGCAGTTGTGGCACAGCCAGCTA
TCAGATTATTCGGCCAATTGACAACCCAACAGCAGCGCCAGATTTTACCTTGATTGATCAGCATGGTGCCGATTTTCATC
TGGCTGAGCAACGTGGCAAAATTGTAATTCTCTTTTTTGGCTTTACTGCGTGCCCCGATGTTTGCCCATTGGCTTTGGGG
CTTTCGTCGCAGGCTCGCAAAAAACTTGCAGATGATGCCGATAAGATTCAAATTGCCTTTGTAACGGTCGATCCAGAGCG
CGATAATCCCGCAACGATTGATCGCTATGTTTCGCTGTTCGATTCGACGATTTTGGGTTTGAACGGCGAAACTGAGGTGG
TTGAGGCGGTCAAAAAGGCCTATGGCGTGCATGCCGAGCGCCGCGAATTGCCTGATTCGGCCTTGCAATACACCATCGAC
CATACCGCTGGCTTGTATATTATCGATCAACAAGGGCGCTGGTTTGCCATGGCCAACCACGATGTTGATCCAACACTTTT
AGCAACTGATCTTGAGACGATGTTGCAATACATCGATGTTGAATAA

Upstream 100 bases:

>100_bases
AACCTATCATCCCCAAATTATCACGCCCCCGCCACGAATTAGCGCATTCGGCTAACTCTTTGTATCCCAATTACGATTAA
ATTGCATAAGGATGGGTGCT

Downstream 100 bases:

>100_bases
TTCTAGGAGCATCTTTCAATGAAACGTTTAATGCTTGGTTTATTGGTCTTGATCTTGGCTGCTTGTGGTTCGGAAACCAC
CTCAACGACCGCTCCTAGCA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKYAHWLFGCVLLGLVLSLSSCGTASYQIIRPIDNPTAAPDFTLIDQHGADFHLAEQRGKIVILFFGFTACPDVCPLALG
LSSQARKKLADDADKIQIAFVTVDPERDNPATIDRYVSLFDSTILGLNGETEVVEAVKKAYGVHAERRELPDSALQYTID
HTAGLYIIDQQGRWFAMANHDVDPTLLATDLETMLQYIDVE

Sequences:

>Translated_201_residues
MKYAHWLFGCVLLGLVLSLSSCGTASYQIIRPIDNPTAAPDFTLIDQHGADFHLAEQRGKIVILFFGFTACPDVCPLALG
LSSQARKKLADDADKIQIAFVTVDPERDNPATIDRYVSLFDSTILGLNGETEVVEAVKKAYGVHAERRELPDSALQYTID
HTAGLYIIDQQGRWFAMANHDVDPTLLATDLETMLQYIDVE
>Mature_201_residues
MKYAHWLFGCVLLGLVLSLSSCGTASYQIIRPIDNPTAAPDFTLIDQHGADFHLAEQRGKIVILFFGFTACPDVCPLALG
LSSQARKKLADDADKIQIAFVTVDPERDNPATIDRYVSLFDSTILGLNGETEVVEAVKKAYGVHAERRELPDSALQYTID
HTAGLYIIDQQGRWFAMANHDVDPTLLATDLETMLQYIDVE

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=134, Percent_Identity=35.8208955223881, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI281182722, Length=134, Percent_Identity=35.8208955223881, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI281182716, Length=134, Percent_Identity=35.8208955223881, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI153791313, Length=134, Percent_Identity=35.8208955223881, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI4759068, Length=172, Percent_Identity=29.0697674418605, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17531419, Length=137, Percent_Identity=32.8467153284672, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319498, Length=143, Percent_Identity=34.965034965035, Blast_Score=89, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6319511, Length=177, Percent_Identity=30.5084745762712, Blast_Score=86, Evalue=3e-18,
Organism=Drosophila melanogaster, GI19920710, Length=164, Percent_Identity=31.7073170731707, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22216; Mature: 22216

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYAHWLFGCVLLGLVLSLSSCGTASYQIIRPIDNPTAAPDFTLIDQHGADFHLAEQRGK
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEECCCCCC
IVILFFGFTACPDVCPLALGLSSQARKKLADDADKIQIAFVTVDPERDNPATIDRYVSLF
EEEEEECCCCCCCHHHHHHCCCHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
DSTILGLNGETEVVEAVKKAYGVHAERRELPDSALQYTIDHTAGLYIIDQQGRWFAMANH
HHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHEEEECCCCCEEEEECCCCEEEEECC
DVDPTLLATDLETMLQYIDVE
CCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYAHWLFGCVLLGLVLSLSSCGTASYQIIRPIDNPTAAPDFTLIDQHGADFHLAEQRGK
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEECCCCCC
IVILFFGFTACPDVCPLALGLSSQARKKLADDADKIQIAFVTVDPERDNPATIDRYVSLF
EEEEEECCCCCCCHHHHHHCCCHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
DSTILGLNGETEVVEAVKKAYGVHAERRELPDSALQYTIDHTAGLYIIDQQGRWFAMANH
HHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHEEEECCCCCEEEEECCCCEEEEECC
DVDPTLLATDLETMLQYIDVE
CCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA