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The map label for this gene is 159899841

Identifier: 159899841

GI number: 159899841

Start: 4192385

End: 4194121

Strand: Reverse

Name: 159899841

Synonym: Haur_3324

Alternate gene names: NA

Gene position: 4194121-4192385 (Counterclockwise)

Preceding gene: 159899846

Following gene: 159899836

Centisome position: 66.08

GC content: 58.26

Gene sequence:

>1737_bases
ATGGCTCGATCCACCGCCGCTCCGGCAACCGACCAGTGGGAACAGCTCTCATTTCGGCTGGTCTGGCCTGAACAACGCCG
CTATGAGACCATTCGCCCCATTGTGCTCTTTGGCGATGCCGCAGAACATCAAGCACGGCGAACCGGAACCCCCATCCGCA
CCCTCTATCATCGCGTCAAACAGTTTGATCGTCAGGGCATCAAGGGCTTGTTGGAAGCCGAAGCCCCCCATGCTGCCCGT
TTGCCTGCCGAAGTCCCACGGCTCATCCGCCGCCTCATTGCGGACTATCCTGACTTTACGCCCCATGAACTCGGTCGCAT
CTGTGAAGTCCAACTTGCCTACCGCCCACACCACACCACCATTCAACGCATCCTCCGGGAAACCCCGCCTGCGCCTGCCG
TTGTCCGGCGTTTTCCGGTATTTCATTCCATGGATCACCAAACACGGCGGTCGGCGGTGCTACGGTTGCATCTCGAAGGA
TGGCCAACCAAGCGCATTGCCGCCTACCTCCAGACCAGTCGGCAAACCGTCCATACCATCGTGACCCGCTTTCGCAGCGA
AGACTTGGCCATGCTGTATCCCCGTTCGCGTGCTCGCAAACCTGGCGCACGGGTCGTGACGACCGAGGGCGTTGCCGCCA
TTCAACAGCTTCGCGCGAATCCGCGCCTCGGGGCCTTTCGCATTCGCGCGGCGTTGAAACAGCAGCAGGGCATTGTCTAT
AGCCGCCGCACGATTAATCGCGTCTTAGCACGCCTTCGGGCGCTGGACCCACCGCCAGCCAAACCGCCAACGACCCCAGC
CCAGCCCATGCCCTTTGCGGCAGCAACCGCGCACGCGGTCTGGAGCGTGGACATCCGCTATCTCGATATGCAAGATATTG
GGGCTGGGATGCTGTATGCCATCACCATTTTGGATAACTACAGTCGCGCCGTCCTCGCCAGTGCCGTCAGTCCGCGGCAA
GATCTCAATGCGTATTTGCAAGTGTTGTTTATCGCCGTGCGCAACTATGGGGTTCCGCAGTGTTTGGTGAGTGATAGCGG
GGCGGTTTTTCGGGCACAGCGAGCACAAACCATTTATCGCATGTTGGGCATTACCAAACGGGTGATCGCCCGTCGCCAAC
CCTGGCAAAATTACATCGAAACGATGTTTAACATCCAACGCCGCATGGCCGACTACCACTTTGAGCAAGCCCAAACGTGG
ACGGATATCCGCGATGCGCACGACCAATGGGTGATGAATTACAACCATCAAGAGCATTGGGCGCATCAAGCGCGACCGGA
TGGTCAGGGTACGCCAATGCAGGTGCTTGATCGGGCGTATGGAACGGTGTATACCGAGGCCGATCTGCGGCTGGTGTTTC
ATGCGGTGCGGAGCCAACGCCGGATTAATCGCCATGGGTTTATCCAGTATCGCGCGTGGCGGATCTATGCGGAAGAAGGG
CTTGCAGGGATTCGCACGGCTGTTTGGTTGCTGGATGAAACGCTGACGATTGCCTATCACGATGAACCGATGGCCGACTA
TCCCGTGACCTACCAGCCGGATGGTCATCATTTTTCTCGGATTGCCGAGCCGCAGTTTTATCCCCATGGGTATGGGTCAC
CCCAAATTCGCTTTTGGGAACACAACGATCCAATCTGGCGCTATGCGTTTCGGGTGGTTTTGACCCCACGCTCGTCATCC
ACTCCCGTTACCCCTCCATGTGAACAGTTGCTCTTCCCCCTTGATCAGGCGGGATGA

Upstream 100 bases:

>100_bases
TGCAGCCATGATGTGGTGCAGATGTTCTGCTTGTGTATCCATTTGGAACTCGCTATGATGCCCTATGGGATGACAACGAT
CCAACCATGGGGGTGTCCAG

Downstream 100 bases:

>100_bases
GTGATGCCCGTGTTAGGCAGCGTTTCTGCAATGGGAAGTGAACGCCCGCGTCAAGCATGATGTGGCACAGTGTCGTGCAA
CCCTCACAGCAAGGCTTGGT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit

Number of amino acids: Translated: 578; Mature: 577

Protein sequence:

>578_residues
MARSTAAPATDQWEQLSFRLVWPEQRRYETIRPIVLFGDAAEHQARRTGTPIRTLYHRVKQFDRQGIKGLLEAEAPHAAR
LPAEVPRLIRRLIADYPDFTPHELGRICEVQLAYRPHHTTIQRILRETPPAPAVVRRFPVFHSMDHQTRRSAVLRLHLEG
WPTKRIAAYLQTSRQTVHTIVTRFRSEDLAMLYPRSRARKPGARVVTTEGVAAIQQLRANPRLGAFRIRAALKQQQGIVY
SRRTINRVLARLRALDPPPAKPPTTPAQPMPFAAATAHAVWSVDIRYLDMQDIGAGMLYAITILDNYSRAVLASAVSPRQ
DLNAYLQVLFIAVRNYGVPQCLVSDSGAVFRAQRAQTIYRMLGITKRVIARRQPWQNYIETMFNIQRRMADYHFEQAQTW
TDIRDAHDQWVMNYNHQEHWAHQARPDGQGTPMQVLDRAYGTVYTEADLRLVFHAVRSQRRINRHGFIQYRAWRIYAEEG
LAGIRTAVWLLDETLTIAYHDEPMADYPVTYQPDGHHFSRIAEPQFYPHGYGSPQIRFWEHNDPIWRYAFRVVLTPRSSS
TPVTPPCEQLLFPLDQAG

Sequences:

>Translated_578_residues
MARSTAAPATDQWEQLSFRLVWPEQRRYETIRPIVLFGDAAEHQARRTGTPIRTLYHRVKQFDRQGIKGLLEAEAPHAAR
LPAEVPRLIRRLIADYPDFTPHELGRICEVQLAYRPHHTTIQRILRETPPAPAVVRRFPVFHSMDHQTRRSAVLRLHLEG
WPTKRIAAYLQTSRQTVHTIVTRFRSEDLAMLYPRSRARKPGARVVTTEGVAAIQQLRANPRLGAFRIRAALKQQQGIVY
SRRTINRVLARLRALDPPPAKPPTTPAQPMPFAAATAHAVWSVDIRYLDMQDIGAGMLYAITILDNYSRAVLASAVSPRQ
DLNAYLQVLFIAVRNYGVPQCLVSDSGAVFRAQRAQTIYRMLGITKRVIARRQPWQNYIETMFNIQRRMADYHFEQAQTW
TDIRDAHDQWVMNYNHQEHWAHQARPDGQGTPMQVLDRAYGTVYTEADLRLVFHAVRSQRRINRHGFIQYRAWRIYAEEG
LAGIRTAVWLLDETLTIAYHDEPMADYPVTYQPDGHHFSRIAEPQFYPHGYGSPQIRFWEHNDPIWRYAFRVVLTPRSSS
TPVTPPCEQLLFPLDQAG
>Mature_577_residues
ARSTAAPATDQWEQLSFRLVWPEQRRYETIRPIVLFGDAAEHQARRTGTPIRTLYHRVKQFDRQGIKGLLEAEAPHAARL
PAEVPRLIRRLIADYPDFTPHELGRICEVQLAYRPHHTTIQRILRETPPAPAVVRRFPVFHSMDHQTRRSAVLRLHLEGW
PTKRIAAYLQTSRQTVHTIVTRFRSEDLAMLYPRSRARKPGARVVTTEGVAAIQQLRANPRLGAFRIRAALKQQQGIVYS
RRTINRVLARLRALDPPPAKPPTTPAQPMPFAAATAHAVWSVDIRYLDMQDIGAGMLYAITILDNYSRAVLASAVSPRQD
LNAYLQVLFIAVRNYGVPQCLVSDSGAVFRAQRAQTIYRMLGITKRVIARRQPWQNYIETMFNIQRRMADYHFEQAQTWT
DIRDAHDQWVMNYNHQEHWAHQARPDGQGTPMQVLDRAYGTVYTEADLRLVFHAVRSQRRINRHGFIQYRAWRIYAEEGL
AGIRTAVWLLDETLTIAYHDEPMADYPVTYQPDGHHFSRIAEPQFYPHGYGSPQIRFWEHNDPIWRYAFRVVLTPRSSST
PVTPPCEQLLFPLDQAG

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66783; Mature: 66652

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSTAAPATDQWEQLSFRLVWPEQRRYETIRPIVLFGDAAEHQARRTGTPIRTLYHRVK
CCCCCCCCCCCCHHCCEEEEECCHHHHHHHCCCEEEECCCHHHHHHHCCCHHHHHHHHHH
QFDRQGIKGLLEAEAPHAARLPAEVPRLIRRLIADYPDFTPHELGRICEVQLAYRPHHTT
HHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHCCCCCCHHHHCCEEEEEEEECCCHHH
IQRILRETPPAPAVVRRFPVFHSMDHQTRRSAVLRLHLEGWPTKRIAAYLQTSRQTVHTI
HHHHHHHCCCCCHHHHHCCHHHCCCHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
VTRFRSEDLAMLYPRSRARKPGARVVTTEGVAAIQQLRANPRLGAFRIRAALKQQQGIVY
HHHHCCCCEEEECCCHHCCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH
SRRTINRVLARLRALDPPPAKPPTTPAQPMPFAAATAHAVWSVDIRYLDMQDIGAGMLYA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEHHHCCCCCEEE
ITILDNYSRAVLASAVSPRQDLNAYLQVLFIAVRNYGVPQCLVSDSGAVFRAQRAQTIYR
EEHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHH
MLGITKRVIARRQPWQNYIETMFNIQRRMADYHFEQAQTWTDIRDAHDQWVMNYNHQEHW
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCHHHH
AHQARPDGQGTPMQVLDRAYGTVYTEADLRLVFHAVRSQRRINRHGFIQYRAWRIYAEEG
HHHCCCCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHCC
LAGIRTAVWLLDETLTIAYHDEPMADYPVTYQPDGHHFSRIAEPQFYPHGYGSPQIRFWE
CHHHHHHHHHHHCEEEEEECCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEE
HNDPIWRYAFRVVLTPRSSSTPVTPPCEQLLFPLDQAG
CCCCCEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
ARSTAAPATDQWEQLSFRLVWPEQRRYETIRPIVLFGDAAEHQARRTGTPIRTLYHRVK
CCCCCCCCCCCHHCCEEEEECCHHHHHHHCCCEEEECCCHHHHHHHCCCHHHHHHHHHH
QFDRQGIKGLLEAEAPHAARLPAEVPRLIRRLIADYPDFTPHELGRICEVQLAYRPHHTT
HHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHCCCCCCHHHHCCEEEEEEEECCCHHH
IQRILRETPPAPAVVRRFPVFHSMDHQTRRSAVLRLHLEGWPTKRIAAYLQTSRQTVHTI
HHHHHHHCCCCCHHHHHCCHHHCCCHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
VTRFRSEDLAMLYPRSRARKPGARVVTTEGVAAIQQLRANPRLGAFRIRAALKQQQGIVY
HHHHCCCCEEEECCCHHCCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH
SRRTINRVLARLRALDPPPAKPPTTPAQPMPFAAATAHAVWSVDIRYLDMQDIGAGMLYA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEHHHCCCCCEEE
ITILDNYSRAVLASAVSPRQDLNAYLQVLFIAVRNYGVPQCLVSDSGAVFRAQRAQTIYR
EEHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHH
MLGITKRVIARRQPWQNYIETMFNIQRRMADYHFEQAQTWTDIRDAHDQWVMNYNHQEHW
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCHHHH
AHQARPDGQGTPMQVLDRAYGTVYTEADLRLVFHAVRSQRRINRHGFIQYRAWRIYAEEG
HHHCCCCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHCC
LAGIRTAVWLLDETLTIAYHDEPMADYPVTYQPDGHHFSRIAEPQFYPHGYGSPQIRFWE
CHHHHHHHHHHHCEEEEEECCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEE
HNDPIWRYAFRVVLTPRSSSTPVTPPCEQLLFPLDQAG
CCCCCEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA