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The map label for this gene is rarA [H]

Identifier: 159899639

GI number: 159899639

Start: 3938343

End: 3939722

Strand: Reverse

Name: rarA [H]

Synonym: Haur_3121

Alternate gene names: 159899639

Gene position: 3939722-3938343 (Counterclockwise)

Preceding gene: 159899653

Following gene: 159899634

Centisome position: 62.08

GC content: 54.57

Gene sequence:

>1380_bases
ATGGATTTATTTAGCTATCAAGCTAGCCAAAGCAATGATGCCCCCTTGGCGGCTCGTATGCGCCCGCGAACTCTCGCCGA
GTACGAGGGCCAAACCAAAATTGTGGGCGAAGGGCGTTTGCTGCGTCGCCTGATCGAGCGCGATCAATTGATTTCGTTGA
TTTTATGGGGGCCACCTGGCACTGGCAAAACCACCCTCGCGCGAATTATCGCTGGAGCTTCTTCGGCACATTTCGAGCCA
CTATCGGCGGTCAGCGCTGGCGTAGCCGAATTACGCAAAGTCGTTAAAGAGGCGAACGAGCGCCGTGGAATGTATGGCAA
ACGCACAGTATTGTTTATCGATGAAATTCATCGTTGGAACAAAGCGCAACAGGATGCCGTACTGCCAGCGGTTGAGGATG
GCACGGTCACCTTGATTGGTGCAACCACTGAAAATCCATCGTTTGAAATTAATCGCGCCTTACTTTCACGCTGTCGGGTG
ATTGTGCTCGAAGCCTTGGAAGATGCCGCAATCGATAAGATCATCGAACGCGCATTAAACGACAACGAACGCGGTTTGGG
CAAACAGCAGGTGCAACTTAGCCCCGAAGCCCGCGATATGTTGATTCATCTGGCAAGTGGTGATGCCCGCGCCGCCTTGA
CTGCGCTCGAAGCCGCCGCATTAACCCAAGTTCCTGAGCCAAACGGCCAACGCCTGATCGATCTTGAGGCGATTGTTGAG
GCCTACCAACGCCGCAACGTGGCCTACGACAAAACTGGCGAATTGCATTACGACGCAATTTCAGCCTTGCATAAATCAGT
CCGTGATAGCGACCCCGATGGCGGCTTATATTGGCTGGCTCGTATGCTTGAGGGCGGCGAAGACCCGCTGTATGTGGCCC
GCCGCGTGATTCGTATGGCAGTCGAAGATATTGGCTTAGCCGACCCACTGGCTTTGGGAATTTGTGTGGCAGCCCAGCAA
GCTGTGCATTTTATGGGTGCTGGTGAAGGGGCATTGGCCTTGGCGCAAGCCGTCGTTTATCTGGCCCAAGCACCAAAGAG
CAATGCGGTCTATCGGGCGTATGGCGCAGTCTTGCACGATGTTGAGGCTACCCGCAACGAACCAGTGCCGCTGCATCTAC
GCAACGCGGTCACTGGCTTGATGAAGGGTTTAGGCTATGGATCGGGCTACCAATATGCCCACGATTTCAAAGATGCCCAG
GTTGAACAGGAGCATCTACCGCCGAATTTAGCGGGGCATCGCTATTACTACCCGACTGATCATGGCTATGAAGCGCGGGT
TCAGCAACGCTTGGCATGGCGTTACCCTGAGGATCAAGCTGCAACGTCGGAAGCTTCCACATCAGCCACGACACCCCAAT
CCCCACCGCCAAAAGGATGA

Upstream 100 bases:

>100_bases
TGCTCGCCACAAGCGGCCAACAAACCAAGCAAACTGATCAAAAGCAGAGCTTTGCGCATGGTACCTCCTAAACATCATCA
TAAGAAAGGTATCACAACTC

Downstream 100 bases:

>100_bases
GCCACAGCCACCAAACTGGTTTGGCCCAGGCTGAAATTGCTAAGGTTGGCCACAAAACCACCAACGTGACCACCTTAGCT
CGCAAGGGCATGCCCCGTTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MDLFSYQASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIERDQLISLILWGPPGTGKTTLARIIAGASSAHFEP
LSAVSAGVAELRKVVKEANERRGMYGKRTVLFIDEIHRWNKAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRV
IVLEALEDAAIDKIIERALNDNERGLGKQQVQLSPEARDMLIHLASGDARAALTALEAAALTQVPEPNGQRLIDLEAIVE
AYQRRNVAYDKTGELHYDAISALHKSVRDSDPDGGLYWLARMLEGGEDPLYVARRVIRMAVEDIGLADPLALGICVAAQQ
AVHFMGAGEGALALAQAVVYLAQAPKSNAVYRAYGAVLHDVEATRNEPVPLHLRNAVTGLMKGLGYGSGYQYAHDFKDAQ
VEQEHLPPNLAGHRYYYPTDHGYEARVQQRLAWRYPEDQAATSEASTSATTPQSPPPKG

Sequences:

>Translated_459_residues
MDLFSYQASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIERDQLISLILWGPPGTGKTTLARIIAGASSAHFEP
LSAVSAGVAELRKVVKEANERRGMYGKRTVLFIDEIHRWNKAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRV
IVLEALEDAAIDKIIERALNDNERGLGKQQVQLSPEARDMLIHLASGDARAALTALEAAALTQVPEPNGQRLIDLEAIVE
AYQRRNVAYDKTGELHYDAISALHKSVRDSDPDGGLYWLARMLEGGEDPLYVARRVIRMAVEDIGLADPLALGICVAAQQ
AVHFMGAGEGALALAQAVVYLAQAPKSNAVYRAYGAVLHDVEATRNEPVPLHLRNAVTGLMKGLGYGSGYQYAHDFKDAQ
VEQEHLPPNLAGHRYYYPTDHGYEARVQQRLAWRYPEDQAATSEASTSATTPQSPPPKG
>Mature_459_residues
MDLFSYQASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIERDQLISLILWGPPGTGKTTLARIIAGASSAHFEP
LSAVSAGVAELRKVVKEANERRGMYGKRTVLFIDEIHRWNKAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRV
IVLEALEDAAIDKIIERALNDNERGLGKQQVQLSPEARDMLIHLASGDARAALTALEAAALTQVPEPNGQRLIDLEAIVE
AYQRRNVAYDKTGELHYDAISALHKSVRDSDPDGGLYWLARMLEGGEDPLYVARRVIRMAVEDIGLADPLALGICVAAQQ
AVHFMGAGEGALALAQAVVYLAQAPKSNAVYRAYGAVLHDVEATRNEPVPLHLRNAVTGLMKGLGYGSGYQYAHDFKDAQ
VEQEHLPPNLAGHRYYYPTDHGYEARVQQRLAWRYPEDQAATSEASTSATTPQSPPPKG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=50.5694760820046, Blast_Score=393, Evalue=1e-109,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=46.2414578587699, Blast_Score=339, Evalue=4e-93,
Organism=Escherichia coli, GI1787119, Length=440, Percent_Identity=49.3181818181818, Blast_Score=420, Evalue=1e-118,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=40.8114558472554, Blast_Score=308, Evalue=2e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=285, Percent_Identity=26.6666666666667, Blast_Score=85, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50171; Mature: 50171

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFSYQASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIERDQLISLILWGPPG
CCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCEEEECCCHHHHHHHHHHHEEEEEEECCCC
TGKTTLARIIAGASSAHFEPLSAVSAGVAELRKVVKEANERRGMYGKRTVLFIDEIHRWN
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHC
KAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRVIVLEALEDAAIDKIIERALN
CHHHCCCCCEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DNERGLGKQQVQLSPEARDMLIHLASGDARAALTALEAAALTQVPEPNGQRLIDLEAIVE
CCCCCCCCHHEEECCCHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHH
AYQRRNVAYDKTGELHYDAISALHKSVRDSDPDGGLYWLARMLEGGEDPLYVARRVIRMA
HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
VEDIGLADPLALGICVAAQQAVHFMGAGEGALALAQAVVYLAQAPKSNAVYRAYGAVLHD
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VEATRNEPVPLHLRNAVTGLMKGLGYGSGYQYAHDFKDAQVEQEHLPPNLAGHRYYYPTD
HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCEEECCCC
HGYEARVQQRLAWRYPEDQAATSEASTSATTPQSPPPKG
CCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLFSYQASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIERDQLISLILWGPPG
CCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCEEEECCCHHHHHHHHHHHEEEEEEECCCC
TGKTTLARIIAGASSAHFEPLSAVSAGVAELRKVVKEANERRGMYGKRTVLFIDEIHRWN
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHC
KAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRVIVLEALEDAAIDKIIERALN
CHHHCCCCCEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DNERGLGKQQVQLSPEARDMLIHLASGDARAALTALEAAALTQVPEPNGQRLIDLEAIVE
CCCCCCCCHHEEECCCHHEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHH
AYQRRNVAYDKTGELHYDAISALHKSVRDSDPDGGLYWLARMLEGGEDPLYVARRVIRMA
HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
VEDIGLADPLALGICVAAQQAVHFMGAGEGALALAQAVVYLAQAPKSNAVYRAYGAVLHD
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VEATRNEPVPLHLRNAVTGLMKGLGYGSGYQYAHDFKDAQVEQEHLPPNLAGHRYYYPTD
HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCEEECCCC
HGYEARVQQRLAWRYPEDQAATSEASTSATTPQSPPPKG
CCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]