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The map label for this gene is chlD [H]

Identifier: 159899615

GI number: 159899615

Start: 3904745

End: 3905542

Strand: Reverse

Name: chlD [H]

Synonym: Haur_3096

Alternate gene names: 159899615

Gene position: 3905542-3904745 (Counterclockwise)

Preceding gene: 159899616

Following gene: 159899614

Centisome position: 61.54

GC content: 55.14

Gene sequence:

>798_bases
ATGCGGCGCAAGGCTGGTGGTCGCCGCACCCGCACTCGAACTGAGCGCAAGCAAGGCCGTTATATCACCAGTCGCGTGCC
ACGCGGCGAATTAACTGATGTGGCCTTTGATGCGACGCTACGGGTGGCCGCACCCTTCCAACGCCAACGCCGCCAGCCGC
ATATCAAACGGGCTGTGGTGTTGCATCGCAGCGATTTACGCGAAAAAGTGCGGGTTCGCCGCACCCGCAATGCTGTTTGT
TTTGTGGTTGATGCCAGCTGGTCGATGGCCGCCGAAACGCGGATGCAAGCGACCAAAGCGGCAGTGCTCTCGTTGTTGCG
CGATGCCTATCAACGGCGCGACTTGGTTGGCTTGGTGAGCTTTGCCCGTGATCGGGCGACGGTGCTCTTGCCACTCACCA
ACAGCGTCGAAATGGCTCAGCAACGCCTGCGCACGATGCCAACTGGTGGCAAAACCCCGCTCAGTCGTGGGATGATGGCT
GGTTTTGAATTATTAGCGCGAGCCAAATTGCGCGATCGCGAAATTTTACCCTTGATGGTGTTGTTGACTGATGGTCATGC
CAATGTCTCGATGACTGGACAGCCACCACAACAAGAAGCCTACCAACTGGCCGAGTTTATCGCCAGCCAACAAATTCCGA
CCGTGGTGATTGATACTGAATTGCCAAATTTCTATCGCGGCCTTGCCAAAGAGCTGGCTGATCGCTTGAATGGCTCGTAT
TATCAACTGGAAGAACTGAGTGTTGGCCTCGCTGAACTGGTACGCTCACACCAAGAATTATCACGTATTAATATTTAG

Upstream 100 bases:

>100_bases
GCCACCCCAAACCAGTAGCCAAGCAGAAAAAGGCGATGGCAAAGTCTTTAATATTGCCCAAGAATATCGCCCCAAGCGTT
TGGAAACCCAAGCCGATTCA

Downstream 100 bases:

>100_bases
TACGTGTAGCTCGACGATACATTTTGGTCTTTACTCTGATGATTGTGAATGCAGCGTTTCCCCACAATCATTGAGCTGAA
GCACCATTAGTTGGATTTGA

Product: von Willebrand factor type A

Products: NA

Alternate protein names: Mg-chelatase subunit D; Mg-protoporphyrin IX chelatase [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRRKAGGRRTRTRTERKQGRYITSRVPRGELTDVAFDATLRVAAPFQRQRRQPHIKRAVVLHRSDLREKVRVRRTRNAVC
FVVDASWSMAAETRMQATKAAVLSLLRDAYQRRDLVGLVSFARDRATVLLPLTNSVEMAQQRLRTMPTGGKTPLSRGMMA
GFELLARAKLRDREILPLMVLLTDGHANVSMTGQPPQQEAYQLAEFIASQQIPTVVIDTELPNFYRGLAKELADRLNGSY
YQLEELSVGLAELVRSHQELSRINI

Sequences:

>Translated_265_residues
MRRKAGGRRTRTRTERKQGRYITSRVPRGELTDVAFDATLRVAAPFQRQRRQPHIKRAVVLHRSDLREKVRVRRTRNAVC
FVVDASWSMAAETRMQATKAAVLSLLRDAYQRRDLVGLVSFARDRATVLLPLTNSVEMAQQRLRTMPTGGKTPLSRGMMA
GFELLARAKLRDREILPLMVLLTDGHANVSMTGQPPQQEAYQLAEFIASQQIPTVVIDTELPNFYRGLAKELADRLNGSY
YQLEELSVGLAELVRSHQELSRINI
>Mature_265_residues
MRRKAGGRRTRTRTERKQGRYITSRVPRGELTDVAFDATLRVAAPFQRQRRQPHIKRAVVLHRSDLREKVRVRRTRNAVC
FVVDASWSMAAETRMQATKAAVLSLLRDAYQRRDLVGLVSFARDRATVLLPLTNSVEMAQQRLRTMPTGGKTPLSRGMMA
GFELLARAKLRDREILPLMVLLTDGHANVSMTGQPPQQEAYQLAEFIASQQIPTVVIDTELPNFYRGLAKELADRLNGSY
YQLEELSVGLAELVRSHQELSRINI

Specific function: Involved in chlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX [H]

COG id: COG1240

COG function: function code H; Mg-chelatase subunit ChlD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 VWFA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011776
- InterPro:   IPR000523
- InterPro:   IPR002035 [H]

Pfam domain/function: PF01078 Mg_chelatase; PF00092 VWA [H]

EC number: =6.6.1.1 [H]

Molecular weight: Translated: 30108; Mature: 30108

Theoretical pI: Translated: 11.61; Mature: 11.61

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRKAGGRRTRTRTERKQGRYITSRVPRGELTDVAFDATLRVAAPFQRQRRQPHIKRAVV
CCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHEECCCHHHHHCCCHHHHHHH
LHRSDLREKVRVRRTRNAVCFVVDASWSMAAETRMQATKAAVLSLLRDAYQRRDLVGLVS
HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FARDRATVLLPLTNSVEMAQQRLRTMPTGGKTPLSRGMMAGFELLARAKLRDREILPLMV
HHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
LLTDGHANVSMTGQPPQQEAYQLAEFIASQQIPTVVIDTELPNFYRGLAKELADRLNGSY
EEECCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCE
YQLEELSVGLAELVRSHQELSRINI
EEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRKAGGRRTRTRTERKQGRYITSRVPRGELTDVAFDATLRVAAPFQRQRRQPHIKRAVV
CCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHEECCCHHHHHCCCHHHHHHH
LHRSDLREKVRVRRTRNAVCFVVDASWSMAAETRMQATKAAVLSLLRDAYQRRDLVGLVS
HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FARDRATVLLPLTNSVEMAQQRLRTMPTGGKTPLSRGMMAGFELLARAKLRDREILPLMV
HHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
LLTDGHANVSMTGQPPQQEAYQLAEFIASQQIPTVVIDTELPNFYRGLAKELADRLNGSY
EEECCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCE
YQLEELSVGLAELVRSHQELSRINI
EEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8663186; 8905231 [H]