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The map label for this gene is ybiK [C]

Identifier: 159899401

GI number: 159899401

Start: 3654185

End: 3655087

Strand: Reverse

Name: ybiK [C]

Synonym: Haur_2882

Alternate gene names: 159899401

Gene position: 3655087-3654185 (Counterclockwise)

Preceding gene: 159899402

Following gene: 159899399

Centisome position: 57.59

GC content: 56.04

Gene sequence:

>903_bases
ATGCCCTTAGCAATTGCCGTTCACGGTGGCGCTGGCGATATTCCCGATTCATTACGCCCAGACCACGCTGCTGGAATTCA
AGCTGCATTGCGAGCAGGCAAGGCGGTATTGCAAGCCGGTGGCACGGCACTTGAAGCCGCTACCGCCGCAGTGATTGTTT
TGGAAGATTTGCCCGCCTTCAATGCTGGCTATGGCAGTGTGCTCAATCGCGAAGGTTTTGTGCAAATGGATGCTGGCTTG
ATGGATGGCACGAGCCTTGATGTAGGCGCAGTTGCCGCTGTCGAAGGCATCAAAAATCCCATTTTGGCCGCTCAGGCAGT
GCTGAAAACCCCGCATATTTTGTTTGCCAAAGCTGATGCCGAGGCAGTTGCGCGGGAAGCTGGCGTTGAATTCGTTGATA
ATGCCAGCTTGATCACGCCTCGACGGCATGCTCAATGGGCCAGCGGCGATCGCGATTTCAAAGTTGATTCGGGTAGCACT
GATAGCGAAACGATTGCCGATACTGTAGGGGCGGTAGCACTTGATGGTTTGGGCAATATTGCAGCAGCCACCTCAACTGG
TGGGATGAGCGGCAAGCCCCTAGGCCGAATCGGCGATTCGCCAATTCCTGGCGGTGGGTTTTATGCCGATAGCCATGCTG
GTGGTTGTTCGACCACGGGCTGGGGCGAAACCATTGCCCGCGTGTTGTTAGCTCGGCGAGCCATCGAAAACCTCGAACGC
GGCATGGATGTGCAAGCAGCCGCTGAAGCCGCTGTCGCAGTGCTGGGCCAACGGATCGAAGGTGGCGAGGGTGGTTTGAT
TTTGGTTGCCAGTAGTGGCCAAATTGGCGCAGCCTTCAACTCGCAGCGCATGACCCACGCCTACTGGAACAACCTCGACG
ATCAAGAACAGATTATCGCCTAA

Upstream 100 bases:

>100_bases
GGCGCGATTGGTTTGCTCAAAAAAGCCTTCTAAAAAATCACTACGTCTAGCGTATAATTGCTGGGCGTAGTTTTTTTATT
TAATTCGATATGAGGTATCT

Downstream 100 bases:

>100_bases
CAATCGTGAGACTTTAATTGCATTCCGTTGCGAGCTAATAGTCCTAGGATTTGATTTATCGGTGAATACATACAAGAGTC
CTCTAAATGTCCTTTAGGGG

Product: peptidase T2 asparaginase 2

Products: NA

Alternate protein names: L-asparagine amidohydrolase [H]

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MPLAIAVHGGAGDIPDSLRPDHAAGIQAALRAGKAVLQAGGTALEAATAAVIVLEDLPAFNAGYGSVLNREGFVQMDAGL
MDGTSLDVGAVAAVEGIKNPILAAQAVLKTPHILFAKADAEAVAREAGVEFVDNASLITPRRHAQWASGDRDFKVDSGST
DSETIADTVGAVALDGLGNIAAATSTGGMSGKPLGRIGDSPIPGGGFYADSHAGGCSTTGWGETIARVLLARRAIENLER
GMDVQAAAEAAVAVLGQRIEGGEGGLILVASSGQIGAAFNSQRMTHAYWNNLDDQEQIIA

Sequences:

>Translated_300_residues
MPLAIAVHGGAGDIPDSLRPDHAAGIQAALRAGKAVLQAGGTALEAATAAVIVLEDLPAFNAGYGSVLNREGFVQMDAGL
MDGTSLDVGAVAAVEGIKNPILAAQAVLKTPHILFAKADAEAVAREAGVEFVDNASLITPRRHAQWASGDRDFKVDSGST
DSETIADTVGAVALDGLGNIAAATSTGGMSGKPLGRIGDSPIPGGGFYADSHAGGCSTTGWGETIARVLLARRAIENLER
GMDVQAAAEAAVAVLGQRIEGGEGGLILVASSGQIGAAFNSQRMTHAYWNNLDDQEQIIA
>Mature_299_residues
PLAIAVHGGAGDIPDSLRPDHAAGIQAALRAGKAVLQAGGTALEAATAAVIVLEDLPAFNAGYGSVLNREGFVQMDAGLM
DGTSLDVGAVAAVEGIKNPILAAQAVLKTPHILFAKADAEAVAREAGVEFVDNASLITPRRHAQWASGDRDFKVDSGSTD
SETIADTVGAVALDGLGNIAAATSTGGMSGKPLGRIGDSPIPGGGFYADSHAGGCSTTGWGETIARVLLARRAIENLERG
MDVQAAAEAAVAVLGQRIEGGEGGLILVASSGQIGAAFNSQRMTHAYWNNLDDQEQIIA

Specific function: Unknown

COG id: COG1446

COG function: function code E; Asparaginase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Ntn-hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI145275202, Length=284, Percent_Identity=41.9014084507042, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI145275200, Length=284, Percent_Identity=41.9014084507042, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI98991769, Length=269, Percent_Identity=33.457249070632, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI285002251, Length=283, Percent_Identity=31.8021201413428, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI285002253, Length=283, Percent_Identity=30.3886925795053, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1787050, Length=296, Percent_Identity=38.1756756756757, Blast_Score=165, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI17569239, Length=314, Percent_Identity=24.8407643312102, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI18921183, Length=309, Percent_Identity=40.1294498381877, Blast_Score=180, Evalue=1e-45,
Organism=Drosophila melanogaster, GI21357893, Length=260, Percent_Identity=35.7692307692308, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI221330102, Length=250, Percent_Identity=33.2, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24652135, Length=250, Percent_Identity=33.2, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24657358, Length=238, Percent_Identity=30.672268907563, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000246 [H]

Pfam domain/function: PF01112 Asparaginase_2 [H]

EC number: =3.5.1.1 [H]

Molecular weight: Translated: 30359; Mature: 30228

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLAIAVHGGAGDIPDSLRPDHAAGIQAALRAGKAVLQAGGTALEAATAAVIVLEDLPAF
CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCC
NAGYGSVLNREGFVQMDAGLMDGTSLDVGAVAAVEGIKNPILAAQAVLKTPHILFAKADA
CCCCHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCH
EAVAREAGVEFVDNASLITPRRHAQWASGDRDFKVDSGSTDSETIADTVGAVALDGLGNI
HHHHHHHCCEEECCCCEECCHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCE
AAATSTGGMSGKPLGRIGDSPIPGGGFYADSHAGGCSTTGWGETIARVLLARRAIENLER
EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
GMDVQAAAEAAVAVLGQRIEGGEGGLILVASSGQIGAAFNSQRMTHAYWNNLDDQEQIIA
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCHHHHCC
>Mature Secondary Structure 
PLAIAVHGGAGDIPDSLRPDHAAGIQAALRAGKAVLQAGGTALEAATAAVIVLEDLPAF
CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCC
NAGYGSVLNREGFVQMDAGLMDGTSLDVGAVAAVEGIKNPILAAQAVLKTPHILFAKADA
CCCCHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCH
EAVAREAGVEFVDNASLITPRRHAQWASGDRDFKVDSGSTDSETIADTVGAVALDGLGNI
HHHHHHHCCEEECCCCEECCHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCE
AAATSTGGMSGKPLGRIGDSPIPGGGFYADSHAGGCSTTGWGETIARVLLARRAIENLER
EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
GMDVQAAAEAAVAVLGQRIEGGEGGLILVASSGQIGAAFNSQRMTHAYWNNLDDQEQIIA
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]