| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is otsB [H]
Identifier: 159899346
GI number: 159899346
Start: 3594397
End: 3595158
Strand: Reverse
Name: otsB [H]
Synonym: Haur_2827
Alternate gene names: 159899346
Gene position: 3595158-3594397 (Counterclockwise)
Preceding gene: 159899347
Following gene: 159899344
Centisome position: 56.65
GC content: 55.38
Gene sequence:
>762_bases TTGGGATTAATCACCGATATTGATGGTACGATCAGTCGAATTGCACCAACGCCTGATGGTGCAACCGTTGATCCTTTATG TCGGGCCGCTTTGAGCCAATTGACTGAGCATTTACCCCTCGTTGCCGCAGTTTCTGGTCGTGCCGCCCGCGATGTGCAAC GTATGCTGCAACTGCCAGCGATGCGCTACATCGGCAACCATGGCTTGGAAATCTGGGGCCAAGATGGTGGGGTACTCGTG CCCGCTGCGCAACCATATAGCGCCGCCGTGCGCGAATTTGTGGCAGCGATGCAGCGCTACGAGCTACCTGAAGGCGTTGT GCTTGAATCCAAGGGCATCACGGCCACCTTACATTATCGCTTGGCGACTGATCAAACGGCGGCTGAGCTTTGGCTGCGCA AGGTTTTGAGCGAACTAGCCGCCGCCCACAATTTGATCATCACCGAAGGGTTGATGATTTTCGAGGTGCGCCCACCCGTT GATTGGCATAAGGGCAGCGCGGTAGCCTGGCTGATCGAGGATCACAAGCTTGAGGCAGCCATCTTTTTGGGCGACGATCT GACCGATGTCGATGGCTTTCGCTCGATTGCGGCAGCGCGTGAACGCGGTTGCCAAGCCTTGGCGATCGGTGTGATCAATC CCGAATCGCATCCATCGGTGGCCGAAACTGCCGATATCTTGATCAACGGCGTTGATGCAAGTGCTGAAGTTTTACAATGG ATTCTTGCACAGCGGTTGAGCGATAGCCATGGCGTTGATTAG
Upstream 100 bases:
>100_bases CTAGCGCCGCATGGCTTTATCTGGTTCCGAATCGAAGGAGTGCGCCTTGCTCTCGACGACGCTTAAACAACGGTTGCAGC CAATTATCAAAGCGGAGCGC
Downstream 100 bases:
>100_bases CTATTGTTATCAATGCTAATCAAGCATATGTGTTCGAATGAAGCGCATCGATAAATGGAAGGCTAACCGATGCGCTTCGT TCATTTAATAAGCTGGCGGT
Product: HAD family hydrolase
Products: NA
Alternate protein names: TPP; Trehalose-6-phosphate phosphatase [H]
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MGLITDIDGTISRIAPTPDGATVDPLCRAALSQLTEHLPLVAAVSGRAARDVQRMLQLPAMRYIGNHGLEIWGQDGGVLV PAAQPYSAAVREFVAAMQRYELPEGVVLESKGITATLHYRLATDQTAAELWLRKVLSELAAAHNLIITEGLMIFEVRPPV DWHKGSAVAWLIEDHKLEAAIFLGDDLTDVDGFRSIAAARERGCQALAIGVINPESHPSVAETADILINGVDASAEVLQW ILAQRLSDSHGVD
Sequences:
>Translated_253_residues MGLITDIDGTISRIAPTPDGATVDPLCRAALSQLTEHLPLVAAVSGRAARDVQRMLQLPAMRYIGNHGLEIWGQDGGVLV PAAQPYSAAVREFVAAMQRYELPEGVVLESKGITATLHYRLATDQTAAELWLRKVLSELAAAHNLIITEGLMIFEVRPPV DWHKGSAVAWLIEDHKLEAAIFLGDDLTDVDGFRSIAAARERGCQALAIGVINPESHPSVAETADILINGVDASAEVLQW ILAQRLSDSHGVD >Mature_252_residues GLITDIDGTISRIAPTPDGATVDPLCRAALSQLTEHLPLVAAVSGRAARDVQRMLQLPAMRYIGNHGLEIWGQDGGVLVP AAQPYSAAVREFVAAMQRYELPEGVVLESKGITATLHYRLATDQTAAELWLRKVLSELAAAHNLIITEGLMIFEVRPPVD WHKGSAVAWLIEDHKLEAAIFLGDDLTDVDGFRSIAAARERGCQALAIGVINPESHPSVAETADILINGVDASAEVLQWI LAQRLSDSHGVD
Specific function: Removes the phosphate from trehalose 6-phosphate to produce free trehalose [H]
COG id: COG1877
COG function: function code G; Trehalose-6-phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trehalose phosphatase family [H]
Homologues:
Organism=Drosophila melanogaster, GI19920676, Length=201, Percent_Identity=34.3283582089552, Blast_Score=108, Evalue=2e-24, Organism=Drosophila melanogaster, GI221473368, Length=207, Percent_Identity=28.5024154589372, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI20129307, Length=207, Percent_Identity=28.5024154589372, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24582490, Length=207, Percent_Identity=28.5024154589372, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI20129309, Length=209, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006379 - InterPro: IPR003337 [H]
Pfam domain/function: PF02358 Trehalose_PPase [H]
EC number: =3.1.3.12 [H]
Molecular weight: Translated: 27220; Mature: 27089
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLITDIDGTISRIAPTPDGATVDPLCRAALSQLTEHLPLVAAVSGRAARDVQRMLQLPA CCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHH MRYIGNHGLEIWGQDGGVLVPAAQPYSAAVREFVAAMQRYELPEGVVLESKGITATLHYR HHHHCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEE LATDQTAAELWLRKVLSELAAAHNLIITEGLMIFEVRPPVDWHKGSAVAWLIEDHKLEAA ECCCHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCEEEEEEECCCEEEE IFLGDDLTDVDGFRSIAAARERGCQALAIGVINPESHPSVAETADILINGVDASAEVLQW EEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHEEECCCCHHHHHHH ILAQRLSDSHGVD HHHHHHCCCCCCC >Mature Secondary Structure GLITDIDGTISRIAPTPDGATVDPLCRAALSQLTEHLPLVAAVSGRAARDVQRMLQLPA CCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHH MRYIGNHGLEIWGQDGGVLVPAAQPYSAAVREFVAAMQRYELPEGVVLESKGITATLHYR HHHHCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEE LATDQTAAELWLRKVLSELAAAHNLIITEGLMIFEVRPPVDWHKGSAVAWLIEDHKLEAA ECCCHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCEEEEEEECCCEEEE IFLGDDLTDVDGFRSIAAARERGCQALAIGVINPESHPSVAETADILINGVDASAEVLQW EEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHEEECCCCHHHHHHH ILAQRLSDSHGVD HHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]