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The map label for this gene is p49 [H]

Identifier: 159899334

GI number: 159899334

Start: 3577071

End: 3578639

Strand: Reverse

Name: p49 [H]

Synonym: Haur_2815

Alternate gene names: 159899334

Gene position: 3578639-3577071 (Counterclockwise)

Preceding gene: 159899337

Following gene: 159899331

Centisome position: 56.39

GC content: 53.15

Gene sequence:

>1569_bases
ATGGACAGCTATGATGTTGTGGTGATTGGCAGCGGACACAATGCCCTGATCGCGGCGGCCTACTTGGCGCGGGCAGGCAA
ATCGGTGTTGGTGCTCGAAAACAACGATCGGATTGGCGGCTTGGTACGGACGGAAGAACTGACCTTACCTGGCTTCAAAC
ATGACGTCTATTCCTCGGCTCACCCATTATTTACCACCAGCCAAGCCTATGCCGACCTTGGCGCAGATTTGACGGCGCGT
GGTTTGCGCTACATCAACACCGATATTCCAACTGGAGTTTCGTTTAGCGATGGGCGCACGGCGATTTTGCCCCAAGCCTT
CGAGGCGGCGTTGGCCGAAGCTGAGCGTTTAGCCACAGGCGATGGCGCGGTGCTTGGTCAAATGTTAGCTTCATTCAACC
CCTATGTTGAAGATGTTTTTGGCTTATTTTCGATGGATTTGCAATCGCCAACGGCGCAAACGATGATTCAACGGTTGCTG
CGGAGCGAAACTGGCTATTCGCCATTTAGTAAATTGTTGTTTGAAACAGCGCGAAATGTGGTCAGCCCATTTCAATCGCC
AGTGATGCAGGCCATGCTTGCGCCTTGGGTGATGCACCTTGGCCGCACTCCCGATGAAATTGGCAGCGGTTTATGGGTCT
ATCTGATTGTGTTGGCGACGATGGGCGCGGGCATGGCAACTCCCGAAGGTGGCAGCGAACAATTAGCCCGCGCTTTGGGT
AGTTTGATCAGCGACCATGGTGGGGTAATTCGCACGCAAACAGCCGCCACGCGGATTGTGCTGAGCAATGGCAAGGCCAG
CGAAGTGCATACTAATACTGGCGAAGCCTTTGGCGTGCGTGAACATGTGATCGCTTCGGTCAATCCTGATCAATTGTATT
TGCGTTTGTTGGCCGATTCGCCGCAGCCGGAGCATGTGCTGCAACAAGCCAAAGAATTTCGCTATGGCCGTGGTTGTGTT
CAAATTCATTTGGCGTTGAGTGAGCCGCCACGTTGGCCTGATGCGCGTTTTAATCGAATTGGTCAGCCGCATTTAACCGA
TGGCCTAAATCAATGTACCTTGGCCGTGGCCCAAGCGATGGCAGGTTTGTTGCCAATCAATCCAACGTTTACCGTCGATT
GCCCGACCAACCTTGACCCAACCCGTGCGCCAGCAGGCAAAGCGATTATGCGAATCCAAGTGCTTGAAGTGCCATGTCGC
CCGATTGGCGATGCCGCCGGACAGATCGCAGTTGGCGATGGTACTTGGACTGGCGATTTAACCCAGCGCTTTGTTGAGCG
CATTTTGGCAATTGTTGAGCGCCATATTCCCAATATTCCATCGAGTGTTGTCGGCTTACACACGGTTACACCAACCAGTT
TAGCCCAATTCAGCCCCAATCTTGGGCCTGGAGATCCTTACGGTGGGGCACATGATTTAGCCCAAAGCTATCTATTGAGT
CCTTTGCCCGCCCAACCTAGCCATCGCACGCTGGTTCCGAATATTTTTATGCTGGGAGCAGCAACATGGCCGGGCCATGG
GATTAATGGTGGTTCTGGCTATATCGTGGCGAAACAGCTTTTAGGCTAA

Upstream 100 bases:

>100_bases
CAAAAACAGCTACAAAATTTGTCTGCTACTTGACACTGCTGTTTGAATAGCTATATACAAAGACCTTCTTGCCGTGTATG
TGTGGTGTGAAAGGAACGTT

Downstream 100 bases:

>100_bases
TTCGATTGGCGGCGCTGGCGTTGCCAACTAATGCCATGCCAAACTGCCCGCAAGCAGGCCAACCAAGCGATTCCGCCAAT
CCATCCTGCACTAATATCGG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MDSYDVVVIGSGHNALIAAAYLARAGKSVLVLENNDRIGGLVRTEELTLPGFKHDVYSSAHPLFTTSQAYADLGADLTAR
GLRYINTDIPTGVSFSDGRTAILPQAFEAALAEAERLATGDGAVLGQMLASFNPYVEDVFGLFSMDLQSPTAQTMIQRLL
RSETGYSPFSKLLFETARNVVSPFQSPVMQAMLAPWVMHLGRTPDEIGSGLWVYLIVLATMGAGMATPEGGSEQLARALG
SLISDHGGVIRTQTAATRIVLSNGKASEVHTNTGEAFGVREHVIASVNPDQLYLRLLADSPQPEHVLQQAKEFRYGRGCV
QIHLALSEPPRWPDARFNRIGQPHLTDGLNQCTLAVAQAMAGLLPINPTFTVDCPTNLDPTRAPAGKAIMRIQVLEVPCR
PIGDAAGQIAVGDGTWTGDLTQRFVERILAIVERHIPNIPSSVVGLHTVTPTSLAQFSPNLGPGDPYGGAHDLAQSYLLS
PLPAQPSHRTLVPNIFMLGAATWPGHGINGGSGYIVAKQLLG

Sequences:

>Translated_522_residues
MDSYDVVVIGSGHNALIAAAYLARAGKSVLVLENNDRIGGLVRTEELTLPGFKHDVYSSAHPLFTTSQAYADLGADLTAR
GLRYINTDIPTGVSFSDGRTAILPQAFEAALAEAERLATGDGAVLGQMLASFNPYVEDVFGLFSMDLQSPTAQTMIQRLL
RSETGYSPFSKLLFETARNVVSPFQSPVMQAMLAPWVMHLGRTPDEIGSGLWVYLIVLATMGAGMATPEGGSEQLARALG
SLISDHGGVIRTQTAATRIVLSNGKASEVHTNTGEAFGVREHVIASVNPDQLYLRLLADSPQPEHVLQQAKEFRYGRGCV
QIHLALSEPPRWPDARFNRIGQPHLTDGLNQCTLAVAQAMAGLLPINPTFTVDCPTNLDPTRAPAGKAIMRIQVLEVPCR
PIGDAAGQIAVGDGTWTGDLTQRFVERILAIVERHIPNIPSSVVGLHTVTPTSLAQFSPNLGPGDPYGGAHDLAQSYLLS
PLPAQPSHRTLVPNIFMLGAATWPGHGINGGSGYIVAKQLLG
>Mature_522_residues
MDSYDVVVIGSGHNALIAAAYLARAGKSVLVLENNDRIGGLVRTEELTLPGFKHDVYSSAHPLFTTSQAYADLGADLTAR
GLRYINTDIPTGVSFSDGRTAILPQAFEAALAEAERLATGDGAVLGQMLASFNPYVEDVFGLFSMDLQSPTAQTMIQRLL
RSETGYSPFSKLLFETARNVVSPFQSPVMQAMLAPWVMHLGRTPDEIGSGLWVYLIVLATMGAGMATPEGGSEQLARALG
SLISDHGGVIRTQTAATRIVLSNGKASEVHTNTGEAFGVREHVIASVNPDQLYLRLLADSPQPEHVLQQAKEFRYGRGCV
QIHLALSEPPRWPDARFNRIGQPHLTDGLNQCTLAVAQAMAGLLPINPTFTVDCPTNLDPTRAPAGKAIMRIQVLEVPCR
PIGDAAGQIAVGDGTWTGDLTQRFVERILAIVERHIPNIPSSVVGLHTVTPTSLAQFSPNLGPGDPYGGAHDLAQSYLLS
PLPAQPSHRTLVPNIFMLGAATWPGHGINGGSGYIVAKQLLG

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=561, Percent_Identity=25.668449197861, Blast_Score=118, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17540238, Length=558, Percent_Identity=24.0143369175627, Blast_Score=121, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55686; Mature: 55686

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSYDVVVIGSGHNALIAAAYLARAGKSVLVLENNDRIGGLVRTEELTLPGFKHDVYSSA
CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEECEECCCCCHHHHHCCC
HPLFTTSQAYADLGADLTARGLRYINTDIPTGVSFSDGRTAILPQAFEAALAEAERLATG
CCCEECHHHHHHHCCCHHHCCHHEECCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCC
DGAVLGQMLASFNPYVEDVFGLFSMDLQSPTAQTMIQRLLRSETGYSPFSKLLFETARNV
CHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VSPFQSPVMQAMLAPWVMHLGRTPDEIGSGLWVYLIVLATMGAGMATPEGGSEQLARALG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
SLISDHGGVIRTQTAATRIVLSNGKASEVHTNTGEAFGVREHVIASVNPDQLYLRLLADS
HHHHCCCCEEEEEHHHEEEEEECCCCCCEECCCCCCCCCHHHHEECCCHHHHHHHHHCCC
PQPEHVLQQAKEFRYGRGCVQIHLALSEPPRWPDARFNRIGQPHLTDGLNQCTLAVAQAM
CCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCCCHHHCCHHHHHHHHHHHH
AGLLPINPTFTVDCPTNLDPTRAPAGKAIMRIQVLEVPCRPIGDAAGQIAVGDGTWTGDL
HCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCHHH
TQRFVERILAIVERHIPNIPSSVVGLHTVTPTSLAQFSPNLGPGDPYGGAHDLAQSYLLS
HHHHHHHHHHHHHHHCCCCCHHHHEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
PLPAQPSHRTLVPNIFMLGAATWPGHGINGGSGYIVAKQLLG
CCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCEEEEHHHCC
>Mature Secondary Structure
MDSYDVVVIGSGHNALIAAAYLARAGKSVLVLENNDRIGGLVRTEELTLPGFKHDVYSSA
CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEECEECCCCCHHHHHCCC
HPLFTTSQAYADLGADLTARGLRYINTDIPTGVSFSDGRTAILPQAFEAALAEAERLATG
CCCEECHHHHHHHCCCHHHCCHHEECCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCC
DGAVLGQMLASFNPYVEDVFGLFSMDLQSPTAQTMIQRLLRSETGYSPFSKLLFETARNV
CHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VSPFQSPVMQAMLAPWVMHLGRTPDEIGSGLWVYLIVLATMGAGMATPEGGSEQLARALG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
SLISDHGGVIRTQTAATRIVLSNGKASEVHTNTGEAFGVREHVIASVNPDQLYLRLLADS
HHHHCCCCEEEEEHHHEEEEEECCCCCCEECCCCCCCCCHHHHEECCCHHHHHHHHHCCC
PQPEHVLQQAKEFRYGRGCVQIHLALSEPPRWPDARFNRIGQPHLTDGLNQCTLAVAQAM
CCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCCCHHHCCHHHHHHHHHHHH
AGLLPINPTFTVDCPTNLDPTRAPAGKAIMRIQVLEVPCRPIGDAAGQIAVGDGTWTGDL
HCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCHHH
TQRFVERILAIVERHIPNIPSSVVGLHTVTPTSLAQFSPNLGPGDPYGGAHDLAQSYLLS
HHHHHHHHHHHHHHHCCCCCHHHHEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
PLPAQPSHRTLVPNIFMLGAATWPGHGINGGSGYIVAKQLLG
CCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCEEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]