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The map label for this gene is xylB [H]

Identifier: 159899037

GI number: 159899037

Start: 3215545

End: 3217095

Strand: Reverse

Name: xylB [H]

Synonym: Haur_2518

Alternate gene names: 159899037

Gene position: 3217095-3215545 (Counterclockwise)

Preceding gene: 159899040

Following gene: 159899036

Centisome position: 50.69

GC content: 50.61

Gene sequence:

>1551_bases
ATGCAACGCCGCTTTCACAATCCAATCATGACGGGCTTTTATCCAGATCCAGCAATTTGTCGGGTAGGCGAAGATTATTA
TCTGATTCACTCGACCTTTGAATATTTTCCAGGTGTGCCGATTCATCATAGCCGCGATTTAGTGCATTGGCAGCAAATTG
GCCATATTTTAGACCGCCCCTCGCAGCTCAACCTCGACGAAATTCATCCATCAGCAGGAATTTTTGCCCCAACTATCAGC
TACCATGATGGCACGTTTTACATGATTACCACCTTGATTGCTGGCAAAGAGCGCCATGGCAACTTTATCGTGACTGCTCA
ATCGCCAGCTGGCCCATGGTCAGACCCCTATTGGCTTGATGCTGATGGGATCGATCCCTCGCTCTTTTTCGAGGATGGTC
GGGCTTGGTATGTGGGCAATCGTGGCAAAGCCAACCCCGAATACGAAGGCCAATGCGAAATTTGGCTGCAAGAGCTTGAT
TTGACCACGATGCAATTGATTGGTGAGCAAGCGGTGCTGTGGCGAGGAGCGCTCAATGGCGTGATTTGGACGGAAGGGCC
ACATCTTTACAAAATTGATGGTTGGTATTATTTGCTGATTGCCGAGGCTGGCACGGAATACAATCATGCGGTAACGATTG
CCCGCAGTAGCGAATTGACCCAAGGCTATATAGGCTATCCCGCCAATCCAATTCTGACCCATCGCCAGCTTGGCCGTGAT
TATCCAGTGATGGGCACGGGCCATTCTGATCTGGTGCAAACCCAAAATGGCGAATGGTGGCTGGTGTTGCTGGCAATGCG
CCCATATGGCGGCGGTTTCTATAATCTTGGGCGTGAAACCTTCTTAGCTCCGGTTCAGTGGGAACAAGGTTGGCCGTTGA
TTAGCCCTGGCACTGGCAAAGTTGAATTGAGCTACCCTGCGCCCGATTTGCCCTTGCAACGCTGGCCAGTTCAAGCTGCC
TGCGATCATTTTGATGGCGACAATTTAGCCATGCATTGGATGTTTTTGCGCACGCCGCGTTCGCAATGGTGGAGCTTGAG
CGAACGAGTTGGTTGGTTGCGCATGCAACTGCGGCCTGAGCAAATCAACCAAATGGTCAACCCTAGCTTTGTTGGGCGAC
GGCAGCAACATATGAACTTCTTAGCGCAAACTATGCTGGAGTTTCAGCCGCAACAGCCGCAAGAAGTAGCGGGTATGGTG
CTGATTCAAAATCATAACTATCAGGTGCAATTTGTAATTACTGGCGAGCAGCAAGCCAGCCTGATTGTGTGTCGCAATGG
TGAGCAAGAATGTTTGGCGCAAGTGCCAATCGCCAGCCAGCGCAACTATTTACGAATTGTGGCTTATGGGCAGGAATATA
GCTTTTTTGTGGCCGAGCAGCCCGATGCATGGCGGCCAGTCTTTGAAAATCTTGATGGCCGCTTTTTGAGCACTCCGGTT
GCTGGTGGTTTTGTGGGCACAGTGATTGGTTTGTATGCCAGTAGCCAAGGCCAAACCAGCCAAACTGTGGCCGATTTCGA
TTGGTTTGAATATCGCGAAATCGCCGAGTAA

Upstream 100 bases:

>100_bases
TCATTAATTGCTCCCAAAACACCTAAAACTTTCAATTGCATCTTAACAAATTTCTGCTAAAAAATAACTAATAAAAACGT
TTCCATGTGTGAGGAACACT

Downstream 100 bases:

>100_bases
TTGGTTGTCCTAGGCTAATTGTTTGGCGGGCGTTGGTTTTTTCGGTTAAAATACATTCCCCAGTGGGCGATCATGCTGCT
ACTGTGGGAGAAAGTAGCGC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MQRRFHNPIMTGFYPDPAICRVGEDYYLIHSTFEYFPGVPIHHSRDLVHWQQIGHILDRPSQLNLDEIHPSAGIFAPTIS
YHDGTFYMITTLIAGKERHGNFIVTAQSPAGPWSDPYWLDADGIDPSLFFEDGRAWYVGNRGKANPEYEGQCEIWLQELD
LTTMQLIGEQAVLWRGALNGVIWTEGPHLYKIDGWYYLLIAEAGTEYNHAVTIARSSELTQGYIGYPANPILTHRQLGRD
YPVMGTGHSDLVQTQNGEWWLVLLAMRPYGGGFYNLGRETFLAPVQWEQGWPLISPGTGKVELSYPAPDLPLQRWPVQAA
CDHFDGDNLAMHWMFLRTPRSQWWSLSERVGWLRMQLRPEQINQMVNPSFVGRRQQHMNFLAQTMLEFQPQQPQEVAGMV
LIQNHNYQVQFVITGEQQASLIVCRNGEQECLAQVPIASQRNYLRIVAYGQEYSFFVAEQPDAWRPVFENLDGRFLSTPV
AGGFVGTVIGLYASSQGQTSQTVADFDWFEYREIAE

Sequences:

>Translated_516_residues
MQRRFHNPIMTGFYPDPAICRVGEDYYLIHSTFEYFPGVPIHHSRDLVHWQQIGHILDRPSQLNLDEIHPSAGIFAPTIS
YHDGTFYMITTLIAGKERHGNFIVTAQSPAGPWSDPYWLDADGIDPSLFFEDGRAWYVGNRGKANPEYEGQCEIWLQELD
LTTMQLIGEQAVLWRGALNGVIWTEGPHLYKIDGWYYLLIAEAGTEYNHAVTIARSSELTQGYIGYPANPILTHRQLGRD
YPVMGTGHSDLVQTQNGEWWLVLLAMRPYGGGFYNLGRETFLAPVQWEQGWPLISPGTGKVELSYPAPDLPLQRWPVQAA
CDHFDGDNLAMHWMFLRTPRSQWWSLSERVGWLRMQLRPEQINQMVNPSFVGRRQQHMNFLAQTMLEFQPQQPQEVAGMV
LIQNHNYQVQFVITGEQQASLIVCRNGEQECLAQVPIASQRNYLRIVAYGQEYSFFVAEQPDAWRPVFENLDGRFLSTPV
AGGFVGTVIGLYASSQGQTSQTVADFDWFEYREIAE
>Mature_516_residues
MQRRFHNPIMTGFYPDPAICRVGEDYYLIHSTFEYFPGVPIHHSRDLVHWQQIGHILDRPSQLNLDEIHPSAGIFAPTIS
YHDGTFYMITTLIAGKERHGNFIVTAQSPAGPWSDPYWLDADGIDPSLFFEDGRAWYVGNRGKANPEYEGQCEIWLQELD
LTTMQLIGEQAVLWRGALNGVIWTEGPHLYKIDGWYYLLIAEAGTEYNHAVTIARSSELTQGYIGYPANPILTHRQLGRD
YPVMGTGHSDLVQTQNGEWWLVLLAMRPYGGGFYNLGRETFLAPVQWEQGWPLISPGTGKVELSYPAPDLPLQRWPVQAA
CDHFDGDNLAMHWMFLRTPRSQWWSLSERVGWLRMQLRPEQINQMVNPSFVGRRQQHMNFLAQTMLEFQPQQPQEVAGMV
LIQNHNYQVQFVITGEQQASLIVCRNGEQECLAQVPIASQRNYLRIVAYGQEYSFFVAEQPDAWRPVFENLDGRFLSTPV
AGGFVGTVIGLYASSQGQTSQTVADFDWFEYREIAE

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=542, Percent_Identity=35.6088560885609, Blast_Score=272, Evalue=4e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 58986; Mature: 58986

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRFHNPIMTGFYPDPAICRVGEDYYLIHSTFEYFPGVPIHHSRDLVHWQQIGHILDRP
CCCCCCCCCEECCCCCCHHEEECCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
SQLNLDEIHPSAGIFAPTISYHDGTFYMITTLIAGKERHGNFIVTAQSPAGPWSDPYWLD
CCCCHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEE
ADGIDPSLFFEDGRAWYVGNRGKANPEYEGQCEIWLQELDLTTMQLIGEQAVLWRGALNG
CCCCCCEEEEECCCEEEECCCCCCCCCCCCCEEEEEEHHCHHHHHHHCCHHEEEHHCCCC
VIWTEGPHLYKIDGWYYLLIAEAGTEYNHAVTIARSSELTQGYIGYPANPILTHRQLGRD
EEECCCCEEEEECCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCC
YPVMGTGHSDLVQTQNGEWWLVLLAMRPYGGGFYNLGRETFLAPVQWEQGWPLISPGTGK
CCEEECCCHHHEECCCCCEEEEEEEECCCCCCHHHCCHHHEEEEEEECCCCEEECCCCCE
VELSYPAPDLPLQRWPVQAACDHFDGDNLAMHWMFLRTPRSQWWSLSERVGWLRMQLRPE
EEEECCCCCCCHHHCCHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHCCEEEEEECHH
QINQMVNPSFVGRRQQHMNFLAQTMLEFQPQQPQEVAGMVLIQNHNYQVQFVITGEQQAS
HHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCEEEEEEEECCCCEE
LIVCRNGEQECLAQVPIASQRNYLRIVAYGQEYSFFVAEQPDAWRPVFENLDGRFLSTPV
EEEECCCCHHHHHCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHCCCCCEEECCC
AGGFVGTVIGLYASSQGQTSQTVADFDWFEYREIAE
CCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHCC
>Mature Secondary Structure
MQRRFHNPIMTGFYPDPAICRVGEDYYLIHSTFEYFPGVPIHHSRDLVHWQQIGHILDRP
CCCCCCCCCEECCCCCCHHEEECCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
SQLNLDEIHPSAGIFAPTISYHDGTFYMITTLIAGKERHGNFIVTAQSPAGPWSDPYWLD
CCCCHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEE
ADGIDPSLFFEDGRAWYVGNRGKANPEYEGQCEIWLQELDLTTMQLIGEQAVLWRGALNG
CCCCCCEEEEECCCEEEECCCCCCCCCCCCCEEEEEEHHCHHHHHHHCCHHEEEHHCCCC
VIWTEGPHLYKIDGWYYLLIAEAGTEYNHAVTIARSSELTQGYIGYPANPILTHRQLGRD
EEECCCCEEEEECCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCC
YPVMGTGHSDLVQTQNGEWWLVLLAMRPYGGGFYNLGRETFLAPVQWEQGWPLISPGTGK
CCEEECCCHHHEECCCCCEEEEEEEECCCCCCHHHCCHHHEEEEEEECCCCEEECCCCCE
VELSYPAPDLPLQRWPVQAACDHFDGDNLAMHWMFLRTPRSQWWSLSERVGWLRMQLRPE
EEEECCCCCCCHHHCCHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHCCEEEEEECHH
QINQMVNPSFVGRRQQHMNFLAQTMLEFQPQQPQEVAGMVLIQNHNYQVQFVITGEQQAS
HHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCEEEEEEEECCCCEE
LIVCRNGEQECLAQVPIASQRNYLRIVAYGQEYSFFVAEQPDAWRPVFENLDGRFLSTPV
EEEECCCCHHHHHCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHCCCCCEEECCC
AGGFVGTVIGLYASSQGQTSQTVADFDWFEYREIAE
CCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]