| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898947
Identifier: 159898947
GI number: 159898947
Start: 3109931
End: 3110578
Strand: Reverse
Name: 159898947
Synonym: Haur_2426
Alternate gene names: NA
Gene position: 3110578-3109931 (Counterclockwise)
Preceding gene: 159898948
Following gene: 159898946
Centisome position: 49.01
GC content: 52.47
Gene sequence:
>648_bases ATGGGAAGGTTAATCGGCATTTTCAGTTTAATCGTGATCTTGGTGGGCTGCACGGAACAACCAGCCGCGCCAGCGAGCAA CCAAATAACGACAGCACCAACCATGATCCAAGCTAGCCCTGCGGTAGCACCATTGGAATCAACCAGCACGCCCAGCACAA CCGAGCCAGTTTCATTGACCTTCACCACCTATCGCGATCCACGCGGAGTATTTGCGATCGATGTGCCCAGCAATTGGCGC ACCGAATCGCTCAAAAATGGCATTGGAATCAGCAGTTTTGCCTATAATGCCAGCGTCGTAGTGACAATTTCGTTTAGTTG GCAGGCCGAACAACTTGATTCAACCAAAGCGGCAGAAATCGTCGAAATGGTTAAATCGCAGACTTTCGCCACCTATCTGA CTCGCGATGTGCAATTGAATAGCGCCAGCGAAGGCGCGACCTACCGCCTTGAGGGTACAGCCAGTTTGAATGCCCAGCCG ATGTATGTGCGCTTTGAACTGAGCCAAACCACAGGCGGCAGCATCATGTTGCAATCGTGGCTTGTGCCCCAAGATTTATG GCCCGATGTCGAAACGACGTTTTACACCCCAATGCAGCGCAGCCTCAGCATCGATGATGAAGCGGCAGCGGCCTTGGCTC AGGAATAA
Upstream 100 bases:
>100_bases TCGCCGATTTGGTAATTCTTGATCAAGATTTAGCCCAAGTTGCCAACGATCAAGTAGCCAAGGTTCAAGTTGCCCAAACG ATCATTGAGGGACAAACGGT
Downstream 100 bases:
>100_bases GGGATCGGCATGAGCAAAATCTGGACTATTGCCCGCCATGAATATTTAACCCATCTGCGCCGTCCGGGCTTTTTGATCTC GACCTTTGGCATGCCGCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MGRLIGIFSLIVILVGCTEQPAAPASNQITTAPTMIQASPAVAPLESTSTPSTTEPVSLTFTTYRDPRGVFAIDVPSNWR TESLKNGIGISSFAYNASVVVTISFSWQAEQLDSTKAAEIVEMVKSQTFATYLTRDVQLNSASEGATYRLEGTASLNAQP MYVRFELSQTTGGSIMLQSWLVPQDLWPDVETTFYTPMQRSLSIDDEAAAALAQE
Sequences:
>Translated_215_residues MGRLIGIFSLIVILVGCTEQPAAPASNQITTAPTMIQASPAVAPLESTSTPSTTEPVSLTFTTYRDPRGVFAIDVPSNWR TESLKNGIGISSFAYNASVVVTISFSWQAEQLDSTKAAEIVEMVKSQTFATYLTRDVQLNSASEGATYRLEGTASLNAQP MYVRFELSQTTGGSIMLQSWLVPQDLWPDVETTFYTPMQRSLSIDDEAAAALAQE >Mature_214_residues GRLIGIFSLIVILVGCTEQPAAPASNQITTAPTMIQASPAVAPLESTSTPSTTEPVSLTFTTYRDPRGVFAIDVPSNWRT ESLKNGIGISSFAYNASVVVTISFSWQAEQLDSTKAAEIVEMVKSQTFATYLTRDVQLNSASEGATYRLEGTASLNAQPM YVRFELSQTTGGSIMLQSWLVPQDLWPDVETTFYTPMQRSLSIDDEAAAALAQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23259; Mature: 23128
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRLIGIFSLIVILVGCTEQPAAPASNQITTAPTMIQASPAVAPLESTSTPSTTEPVSLT CCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCEEEE FTTYRDPRGVFAIDVPSNWRTESLKNGIGISSFAYNASVVVTISFSWQAEQLDSTKAAEI EEEECCCCCEEEEECCCCCCHHHHHCCCCCEEEEECCEEEEEEEECCCHHHHCCHHHHHH VEMVKSQTFATYLTRDVQLNSASEGATYRLEGTASLNAQPMYVRFELSQTTGGSIMLQSW HHHHHHHHHEEHHEEEEEECCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEE LVPQDLWPDVETTFYTPMQRSLSIDDEAAAALAQE CCCHHCCCCCCCEEECCCHHCCCCCHHHHHHHCCC >Mature Secondary Structure GRLIGIFSLIVILVGCTEQPAAPASNQITTAPTMIQASPAVAPLESTSTPSTTEPVSLT CHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCEEEE FTTYRDPRGVFAIDVPSNWRTESLKNGIGISSFAYNASVVVTISFSWQAEQLDSTKAAEI EEEECCCCCEEEEECCCCCCHHHHHCCCCCEEEEECCEEEEEEEECCCHHHHCCHHHHHH VEMVKSQTFATYLTRDVQLNSASEGATYRLEGTASLNAQPMYVRFELSQTTGGSIMLQSW HHHHHHHHHEEHHEEEEEECCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEE LVPQDLWPDVETTFYTPMQRSLSIDDEAAAALAQE CCCHHCCCCCCCEEECCCHHCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA