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The map label for this gene is ykfC [H]

Identifier: 159898906

GI number: 159898906

Start: 3037877

End: 3039172

Strand: Direct

Name: ykfC [H]

Synonym: Haur_2385

Alternate gene names: 159898906

Gene position: 3037877-3039172 (Clockwise)

Preceding gene: 159898905

Following gene: 159898907

Centisome position: 47.87

GC content: 53.32

Gene sequence:

>1296_bases
ATGCAACCACGCTATGAATCGGCGATGTTGGCCGAAATTGCCAGCGTCGATAATTTGACTCGCGCTTGGAGCCATGTGCG
GCGTAATATTCGCATTTCGCAACGTGGGCGCTCACATGGCCCCGATGCAGTGACGATTTTGGATTTTGAGGCCGCTTGGG
TTGATCACATGCAACAGTTGGCAATGGAATTGCAAAGCCAAATTTATCGGCCTTTGCCACCACGGCGGCTTTTTTTGGAT
AAACGTGATGGTGGCAAACGCAGTATTGCGATTCTCGCCGTGCGCGACCGGATTGCCCAACGCGCGGTGTTGCAAATTCT
TGAGCCAGAAATCGAGCCAACTTTTTTGGATTGTTCGTATGGCTTTCGGCCTTACGTTGGCGTGCCCCATGCCCTAACCC
GAATCGAACGCTATCGCCAGCAGGGTTTGCAATGGGTTGCCCACGCTGATATTAGCGATTGTTTTGGCACAATCGATCAT
CAAATTTTGCTCAGTCAATTACATCAACGAATTAGCGATCGGGCAGTCGTCGAATTAATTGGCCAGTGGCTAAGCGTTGG
CGTGATGGAAGATGCCGCAACCACCGAAGCCAGTAATTGGTGGGATGATGGCGAAGATTTGCTTGAACGCTTGGCGAAAC
ATGGCGAAGATCTGCTCTGGCCAAATCAGGGCTACCCTCAGGCTGGCCCATCCTATGCTCCGCAAATGCTTGATTTTGAG
GCCAACCGCACCGATAGTTTGCGCAAACGAGCCTTGCAAGGTCTCGCCAGCAACGCCGCCCTGTGGGGCATAACCCATAG
CAAACGGGTTATTAGTGGTTTGCGCAGCTTGGCTCCGTTATTCAAACAAGTGCCTGGTGGCAGCCTAACATGGGGCGCTG
CTGGGATTGCAACCCTAGCCTTAATTCCGCTGAGCCAGCGTTTGTTGCGCCAACATGAACGTGGCACGCTCCAAGGTGGG
GCAATTTCACCGATGCTCGCCAATATCTACCTCGATTCCTTTGATCGGGCGATGACTGAGCGGGGCCATATTTTGGTGCG
ATTTGCCGATGATTTTGTGCTACTGGGCGCACATCAAGCGGCAGTTGAGCAAGCGCTTGCCGATGCAACCAATGTGCTCA
AGCGCTTACGCCTCGCCACCAAAGAGAGCAAAACTGGGGTGCAGCATTTTAATGATGGCCTGACCTTCCTTGGACATCGC
TTTGCCGCTCAACCACAGGATGCAGCCGACCGCTGGCCGACCTTCGAAGCGGCTGAGCGGGCGATTAAAGAGCGTTTGCG
CAAACCTCGTACATAA

Upstream 100 bases:

>100_bases
GCCAACGAACAACTGGTGCATTGGCTAAGCTTGCCCGATTTAAGCCCCAACGAACGCCAAACCTATCACATTTCAAGCAT
AAATTCTATGGAGGAACCCG

Downstream 100 bases:

>100_bases
AATCTGACAAGCAGTTTGATAATGAACCTGTATCTTGTACCCCTCGCCAATATTGAAGCCAGCGTTAAAAAGGATCGTCA
GCCATGCCAACTCTCTATTT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MQPRYESAMLAEIASVDNLTRAWSHVRRNIRISQRGRSHGPDAVTILDFEAAWVDHMQQLAMELQSQIYRPLPPRRLFLD
KRDGGKRSIAILAVRDRIAQRAVLQILEPEIEPTFLDCSYGFRPYVGVPHALTRIERYRQQGLQWVAHADISDCFGTIDH
QILLSQLHQRISDRAVVELIGQWLSVGVMEDAATTEASNWWDDGEDLLERLAKHGEDLLWPNQGYPQAGPSYAPQMLDFE
ANRTDSLRKRALQGLASNAALWGITHSKRVISGLRSLAPLFKQVPGGSLTWGAAGIATLALIPLSQRLLRQHERGTLQGG
AISPMLANIYLDSFDRAMTERGHILVRFADDFVLLGAHQAAVEQALADATNVLKRLRLATKESKTGVQHFNDGLTFLGHR
FAAQPQDAADRWPTFEAAERAIKERLRKPRT

Sequences:

>Translated_431_residues
MQPRYESAMLAEIASVDNLTRAWSHVRRNIRISQRGRSHGPDAVTILDFEAAWVDHMQQLAMELQSQIYRPLPPRRLFLD
KRDGGKRSIAILAVRDRIAQRAVLQILEPEIEPTFLDCSYGFRPYVGVPHALTRIERYRQQGLQWVAHADISDCFGTIDH
QILLSQLHQRISDRAVVELIGQWLSVGVMEDAATTEASNWWDDGEDLLERLAKHGEDLLWPNQGYPQAGPSYAPQMLDFE
ANRTDSLRKRALQGLASNAALWGITHSKRVISGLRSLAPLFKQVPGGSLTWGAAGIATLALIPLSQRLLRQHERGTLQGG
AISPMLANIYLDSFDRAMTERGHILVRFADDFVLLGAHQAAVEQALADATNVLKRLRLATKESKTGVQHFNDGLTFLGHR
FAAQPQDAADRWPTFEAAERAIKERLRKPRT
>Mature_431_residues
MQPRYESAMLAEIASVDNLTRAWSHVRRNIRISQRGRSHGPDAVTILDFEAAWVDHMQQLAMELQSQIYRPLPPRRLFLD
KRDGGKRSIAILAVRDRIAQRAVLQILEPEIEPTFLDCSYGFRPYVGVPHALTRIERYRQQGLQWVAHADISDCFGTIDH
QILLSQLHQRISDRAVVELIGQWLSVGVMEDAATTEASNWWDDGEDLLERLAKHGEDLLWPNQGYPQAGPSYAPQMLDFE
ANRTDSLRKRALQGLASNAALWGITHSKRVISGLRSLAPLFKQVPGGSLTWGAAGIATLALIPLSQRLLRQHERGTLQGG
AISPMLANIYLDSFDRAMTERGHILVRFADDFVLLGAHQAAVEQALADATNVLKRLRLATKESKTGVQHFNDGLTFLGHR
FAAQPQDAADRWPTFEAAERAIKERLRKPRT

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=377, Percent_Identity=21.7506631299735, Blast_Score=97, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6226520, Length=182, Percent_Identity=24.7252747252747, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 48430; Mature: 48430

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50878 RT_POL ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPRYESAMLAEIASVDNLTRAWSHVRRNIRISQRGRSHGPDAVTILDFEAAWVDHMQQL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEECHHHHHHHHHHH
AMELQSQIYRPLPPRRLFLDKRDGGKRSIAILAVRDRIAQRAVLQILEPEIEPTFLDCSY
HHHHHHHHHCCCCCHHEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCC
GFRPYVGVPHALTRIERYRQQGLQWVAHADISDCFGTIDHQILLSQLHQRISDRAVVELI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GQWLSVGVMEDAATTEASNWWDDGEDLLERLAKHGEDLLWPNQGYPQAGPSYAPQMLDFE
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCC
ANRTDSLRKRALQGLASNAALWGITHSKRVISGLRSLAPLFKQVPGGSLTWGAAGIATLA
CCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LIPLSQRLLRQHERGTLQGGAISPMLANIYLDSFDRAMTERGHILVRFADDFVLLGAHQA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCHHH
AVEQALADATNVLKRLRLATKESKTGVQHFNDGLTFLGHRFAAQPQDAADRWPTFEAAER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHCCCCHHHHHH
AIKERLRKPRT
HHHHHHHCCCC
>Mature Secondary Structure
MQPRYESAMLAEIASVDNLTRAWSHVRRNIRISQRGRSHGPDAVTILDFEAAWVDHMQQL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEECHHHHHHHHHHH
AMELQSQIYRPLPPRRLFLDKRDGGKRSIAILAVRDRIAQRAVLQILEPEIEPTFLDCSY
HHHHHHHHHCCCCCHHEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCC
GFRPYVGVPHALTRIERYRQQGLQWVAHADISDCFGTIDHQILLSQLHQRISDRAVVELI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GQWLSVGVMEDAATTEASNWWDDGEDLLERLAKHGEDLLWPNQGYPQAGPSYAPQMLDFE
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCC
ANRTDSLRKRALQGLASNAALWGITHSKRVISGLRSLAPLFKQVPGGSLTWGAAGIATLA
CCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LIPLSQRLLRQHERGTLQGGAISPMLANIYLDSFDRAMTERGHILVRFADDFVLLGAHQA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCHHH
AVEQALADATNVLKRLRLATKESKTGVQHFNDGLTFLGHRFAAQPQDAADRWPTFEAAER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHCCCCHHHHHH
AIKERLRKPRT
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]