| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is yhxC [H]
Identifier: 159898886
GI number: 159898886
Start: 3012903
End: 3013769
Strand: Direct
Name: yhxC [H]
Synonym: Haur_2365
Alternate gene names: 159898886
Gene position: 3012903-3013769 (Clockwise)
Preceding gene: 159898883
Following gene: 159898889
Centisome position: 47.47
GC content: 49.25
Gene sequence:
>867_bases ATGTCAAATAATCAACTAAAACAGCAATTTCCAGCCCAAACCCAGGATCAACAGCCTGGAATCGAATCGGCAATGCAGCC CAAACCCAAAGCCCACGATCGTAGCTATCGTGGGAGTGGCAAGCTCAAGGATAAAGTTGCGCTGATCACTGGCGGCGATA GTGGCATCGGTCGCGCAGTAGCAATCGTGTATGCCAAAGAGGGCGCAGATGTTGCAATCAATTATTTAAATGAACATGAA GATGCCCAAGAAACCAAACGGCTGGTTGAGGCCGAAGGTCAGCGCTGCTGGCTCTCAGCTGGCGATATTGGCGATGAAGC ATATTGCCAAGGCTTAGTTGAACAAACCGTTGCAACATTCGGCCAACTTGATATTTTGATCAACAATGCCGCCGAGCAAC ATCAGCAAAAATCGATCACCGATATTAGTGCTGAGCAATTGGAGCGCACCTTTCGCACCAATATCTTTGCCATGTTCTAT TTGACCAAAGCTGCCTTGCCACACCTGAAGGCTGGCAGTAGCATCATTAATACTGCTTCGGTGACGGCCTATCGTGGCAG CCCTCAATTGCTCGATTATTCGGCAACCAAAGGGGCAATTGTAGCCTTTACTCGTTCGCTCTCGCAAGCATTGATTGACC AAAAGATTCGGGTCAATGGCGTAGCACCTGGCCCAATTTGGACTCCACTGATTCCTGCAACCTTCGAGGCCGAAAAAGTT GCGCCGTTTGGCAGTGATGTTCCGATGCAGCGGGCAGGCCAACCTGAAGAAGTCGCCAATTGTTATGTATTTCTAGCAAG CGACGATGCATCATATATGGCTGGGCAAATTTTGCATCCCAATGGTGGCGAAGTGATCAATGGCTAG
Upstream 100 bases:
>100_bases GAGGGGATAGGCGCTGACCCACAAGATCGCAGTTCAACACAACAATTGGTATGGTTCTTGCATTGCTCAATCGTAAATGT ATATAAAAGGAAAATTTATT
Downstream 100 bases:
>100_bases CTAAGGCCATGTTTTTCTAGCCGATAGAGTAATTGATGGCGCGATAAGCCCAATAATTCAGCGGCGCGGGTTTTATTACC ATTGGCTTGTTGCAAGGCCT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: ORFX [H]
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSNNQLKQQFPAQTQDQQPGIESAMQPKPKAHDRSYRGSGKLKDKVALITGGDSGIGRAVAIVYAKEGADVAINYLNEHE DAQETKRLVEAEGQRCWLSAGDIGDEAYCQGLVEQTVATFGQLDILINNAAEQHQQKSITDISAEQLERTFRTNIFAMFY LTKAALPHLKAGSSIINTASVTAYRGSPQLLDYSATKGAIVAFTRSLSQALIDQKIRVNGVAPGPIWTPLIPATFEAEKV APFGSDVPMQRAGQPEEVANCYVFLASDDASYMAGQILHPNGGEVING
Sequences:
>Translated_288_residues MSNNQLKQQFPAQTQDQQPGIESAMQPKPKAHDRSYRGSGKLKDKVALITGGDSGIGRAVAIVYAKEGADVAINYLNEHE DAQETKRLVEAEGQRCWLSAGDIGDEAYCQGLVEQTVATFGQLDILINNAAEQHQQKSITDISAEQLERTFRTNIFAMFY LTKAALPHLKAGSSIINTASVTAYRGSPQLLDYSATKGAIVAFTRSLSQALIDQKIRVNGVAPGPIWTPLIPATFEAEKV APFGSDVPMQRAGQPEEVANCYVFLASDDASYMAGQILHPNGGEVING >Mature_287_residues SNNQLKQQFPAQTQDQQPGIESAMQPKPKAHDRSYRGSGKLKDKVALITGGDSGIGRAVAIVYAKEGADVAINYLNEHED AQETKRLVEAEGQRCWLSAGDIGDEAYCQGLVEQTVATFGQLDILINNAAEQHQQKSITDISAEQLERTFRTNIFAMFYL TKAALPHLKAGSSIINTASVTAYRGSPQLLDYSATKGAIVAFTRSLSQALIDQKIRVNGVAPGPIWTPLIPATFEAEKVA PFGSDVPMQRAGQPEEVANCYVFLASDDASYMAGQILHPNGGEVING
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=32.2448979591837, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=31.25, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=34.5360824742268, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=30.9917355371901, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=30.6201550387597, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=30.4182509505703, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=28.6290322580645, Blast_Score=95, Evalue=9e-20, Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=29.9610894941634, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=28.8702928870293, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=29.7619047619048, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI31542939, Length=241, Percent_Identity=28.6307053941909, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=30, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=27.9352226720648, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI142976729, Length=221, Percent_Identity=27.1493212669683, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=27.8606965174129, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI7706318, Length=216, Percent_Identity=24.537037037037, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=28.6821705426357, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI210032110, Length=187, Percent_Identity=28.3422459893048, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=26.8421052631579, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=28.4210526315789, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI224922801, Length=168, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4503301, Length=199, Percent_Identity=28.1407035175879, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789378, Length=278, Percent_Identity=48.2014388489209, Blast_Score=264, Evalue=6e-72, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=37.6984126984127, Blast_Score=157, Evalue=7e-40, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=33.6065573770492, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=30.8641975308642, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=30.6772908366534, Blast_Score=117, Evalue=8e-28, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=30.3501945525292, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=30.3643724696356, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=33.2, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=29.718875502008, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=29.7071129707113, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=26.8, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=25.296442687747, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788891, Length=244, Percent_Identity=28.2786885245902, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=24.8062015503876, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1787545, Length=251, Percent_Identity=22.7091633466135, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.5301204819277, Blast_Score=126, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=32.5757575757576, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=34.0996168582375, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=31.7073170731707, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=32.5396825396825, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=33.7121212121212, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=32.4528301886792, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=32.9545454545455, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=33.5849056603774, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=33.457249070632, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=32.6923076923077, Blast_Score=114, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=32.4528301886792, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=30.7692307692308, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17555706, Length=270, Percent_Identity=30, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=30.3846153846154, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=31.8181818181818, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=29.0076335877863, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=30.46875, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=31.1538461538462, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=31.1787072243346, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=30.9160305343511, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=30.9803921568627, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=28.5140562248996, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=28.4615384615385, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17538182, Length=232, Percent_Identity=32.3275862068966, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17564282, Length=173, Percent_Identity=33.5260115606936, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=27.8225806451613, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17561272, Length=253, Percent_Identity=28.4584980237154, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567345, Length=190, Percent_Identity=32.6315789473684, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71982365, Length=208, Percent_Identity=31.25, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193203115, Length=235, Percent_Identity=26.8085106382979, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508651, Length=246, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=32.3232323232323, Blast_Score=92, Evalue=7e-20, Organism=Saccharomyces cerevisiae, GI6322861, Length=203, Percent_Identity=30.0492610837438, Blast_Score=72, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=26.2948207171315, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=210, Percent_Identity=24.7619047619048, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=34.9397590361446, Blast_Score=130, Evalue=9e-31, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=36.1788617886179, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=35.0806451612903, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=32.4, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.4, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=30.6772908366534, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=31.6872427983539, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI17737361, Length=234, Percent_Identity=30.3418803418803, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24644337, Length=247, Percent_Identity=34.412955465587, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI116007236, Length=236, Percent_Identity=28.3898305084746, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364892, Length=172, Percent_Identity=30.8139534883721, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=30.8080808080808, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24580925, Length=228, Percent_Identity=27.1929824561404, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641232, Length=205, Percent_Identity=24.390243902439, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24581726, Length=173, Percent_Identity=33.5260115606936, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31069; Mature: 30938
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNQLKQQFPAQTQDQQPGIESAMQPKPKAHDRSYRGSGKLKDKVALITGGDSGIGRAV CCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEE AIVYAKEGADVAINYLNEHEDAQETKRLVEAEGQRCWLSAGDIGDEAYCQGLVEQTVATF EEEEECCCCCEEEEEHHCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHH GQLDILINNAAEQHQQKSITDISAEQLERTFRTNIFAMFYLTKAALPHLKAGSSIINTAS HHHHEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCE VTAYRGSPQLLDYSATKGAIVAFTRSLSQALIDQKIRVNGVAPGPIWTPLIPATFEAEKV EEEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCC APFGSDVPMQRAGQPEEVANCYVFLASDDASYMAGQILHPNGGEVING CCCCCCCCHHHCCCHHHHCEEEEEEECCCCCHHCCEEECCCCCCCCCC >Mature Secondary Structure SNNQLKQQFPAQTQDQQPGIESAMQPKPKAHDRSYRGSGKLKDKVALITGGDSGIGRAV CCCCHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEE AIVYAKEGADVAINYLNEHEDAQETKRLVEAEGQRCWLSAGDIGDEAYCQGLVEQTVATF EEEEECCCCCEEEEEHHCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHH GQLDILINNAAEQHQQKSITDISAEQLERTFRTNIFAMFYLTKAALPHLKAGSSIINTAS HHHHEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCE VTAYRGSPQLLDYSATKGAIVAFTRSLSQALIDQKIRVNGVAPGPIWTPLIPATFEAEKV EEEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCC APFGSDVPMQRAGQPEEVANCYVFLASDDASYMAGQILHPNGGEVING CCCCCCCCHHHCCCHHHHCEEEEEEECCCCCHHCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 8196543 [H]