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The map label for this gene is algU [H]

Identifier: 159898838

GI number: 159898838

Start: 2959193

End: 2959759

Strand: Reverse

Name: algU [H]

Synonym: Haur_2317

Alternate gene names: 159898838

Gene position: 2959759-2959193 (Counterclockwise)

Preceding gene: 159898841

Following gene: 159898837

Centisome position: 46.64

GC content: 52.2

Gene sequence:

>567_bases
ATGCACGATCACGAAGCTATAGCTCGACTCAAACAAGGTGATATCGCTGGGCTAGCCCCCCTTGTTCATCAATATCAATA
TCAGGCTGTCCGCGCAGCGATCTTGGTTGTCCGCGATCGGGCTGCTGCTGAAGATATTGTTCAATCGGCTTTTCTGCGGG
TGGTGCAGCGCATCCAACAATTTGATAGCCAACGCGCCTTCGGCCCGTGGTTTATGAAAATTGTGTTGAACGATGCACTC
AAAGATGCCCAACGCCGCGAACGCCAAAGCTCACTTGATCAATCAAACGCTGCTGGCTTGGCGTTGTTCGAAGAATTAAT
GAGCAACGAACCCCAACCAGAGGCCTTGCTGGAGCAAGATGCACTGCGCGAAAGCGTCATGCAAGCCTTGAACCAACTAA
CACCGTTGCAACGGGCAGCAATTGTGCAACGCTATTACCTTGGAATGAGCGAGGCCGAAATGGCCGATGATGCCGCCACC
AGCGCAGGCGCAATCAAACAACGCTTGTTCGGTGCTCGCGAACGGTTACGTCGGCTCTTAGCCCCAATTATTAATGAATC
TGTGTAG

Upstream 100 bases:

>100_bases
TTGATTTGTTCTATGTTCGCTTTGTGGTGGCCTAACTTTTTAGCCTGTGCTTGGATATATCTAGTGAGGGCGCACTCAAC
AATTGGCTGAAAGGAAGGAT

Downstream 100 bases:

>100_bases
TCGAGGAGTCTGCAATGCATAACGATAAGCATATTTCACAAGCACTCACCAGCATCGCTGAGCATGAAGTGCCTGAAGGT
TCGCTCAATTTGCTCAAGCC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MHDHEAIARLKQGDIAGLAPLVHQYQYQAVRAAILVVRDRAAAEDIVQSAFLRVVQRIQQFDSQRAFGPWFMKIVLNDAL
KDAQRRERQSSLDQSNAAGLALFEELMSNEPQPEALLEQDALRESVMQALNQLTPLQRAAIVQRYYLGMSEAEMADDAAT
SAGAIKQRLFGARERLRRLLAPIINESV

Sequences:

>Translated_188_residues
MHDHEAIARLKQGDIAGLAPLVHQYQYQAVRAAILVVRDRAAAEDIVQSAFLRVVQRIQQFDSQRAFGPWFMKIVLNDAL
KDAQRRERQSSLDQSNAAGLALFEELMSNEPQPEALLEQDALRESVMQALNQLTPLQRAAIVQRYYLGMSEAEMADDAAT
SAGAIKQRLFGARERLRRLLAPIINESV
>Mature_188_residues
MHDHEAIARLKQGDIAGLAPLVHQYQYQAVRAAILVVRDRAAAEDIVQSAFLRVVQRIQQFDSQRAFGPWFMKIVLNDAL
KDAQRRERQSSLDQSNAAGLALFEELMSNEPQPEALLEQDALRESVMQALNQLTPLQRAAIVQRYYLGMSEAEMADDAAT
SAGAIKQRLFGARERLRRLLAPIINESV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=193, Percent_Identity=30.5699481865285, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21111; Mature: 21111

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDHEAIARLKQGDIAGLAPLVHQYQYQAVRAAILVVRDRAAAEDIVQSAFLRVVQRIQQ
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDSQRAFGPWFMKIVLNDALKDAQRRERQSSLDQSNAAGLALFEELMSNEPQPEALLEQD
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHH
ALRESVMQALNQLTPLQRAAIVQRYYLGMSEAEMADDAATSAGAIKQRLFGARERLRRLL
HHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APIINESV
HHHHCCCC
>Mature Secondary Structure
MHDHEAIARLKQGDIAGLAPLVHQYQYQAVRAAILVVRDRAAAEDIVQSAFLRVVQRIQQ
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDSQRAFGPWFMKIVLNDALKDAQRRERQSSLDQSNAAGLALFEELMSNEPQPEALLEQD
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHH
ALRESVMQALNQLTPLQRAAIVQRYYLGMSEAEMADDAATSAGAIKQRLFGARERLRRLL
HHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APIINESV
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]