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The map label for this gene is ydbM [H]

Identifier: 159898825

GI number: 159898825

Start: 2943257

End: 2944435

Strand: Reverse

Name: ydbM [H]

Synonym: Haur_2304

Alternate gene names: 159898825

Gene position: 2944435-2943257 (Counterclockwise)

Preceding gene: 159898829

Following gene: 159898821

Centisome position: 46.39

GC content: 54.54

Gene sequence:

>1179_bases
ATGACGATAGATTTACTGCATCGCGGCTTGACTGAACGTCAGCGCGGCTTTGTGCAACTTGGGCAGGATTTGGCGGCGTT
GATTAAACCAAGTGCTGGCTTGCATGATCAAGCTGCGAGCTTTCCCTTTGAGCATTTATCAGCCTTTTTTGCTGCTCGGT
ATCAGGCCTTGAGCGTTCCAGCGGAATTCGGCGGCCATGGTGCAAGCTTGTTTGAGGCAATTTTGGCTCAAGAGCAATTG
GCCTATGGCGATGGCTCGCTAGCCTTGGTGATGGCCATGCCGATTCATGTGCTTGGGGGAATTATCGAAGGTGGCGCGTG
GCAGCCAAGCCAAATCGAACGGATTAGCCGTTTGGTGGTCGATCAGTCGATAGTGCTCAATTCGGCGGCCAGCGAACGCG
AAATGGGCAGCCCTGCCCGTGGTGGTTTGTTTGCGACGGTTGCGCGGCAGGTCGAGGGTGGTTGGTTGTTGCATGGCCGC
AAAATCTATACAACTGGTGCGCCAGCCCTGACCCACGCCCTAATTAGCGCGACGATTGCTGATACCAGCGATACGGCGAT
TTTTTTGGTCGATCTTAAACAAGTAGGGATTACGATTGAGCCAACTTGGAATGGCACGGCGATGCGGGCGGCTCGCAATG
ACGATATTGTGCTTGATGCTGTGTTTGTGGCTGAGGCGAATCTTGTGCAGCGTCGCCAGCCTGGGCTGGTTGATCCAAGC
CGCAACAATGCTGGGGCATGGTTTCAACTGAATATGGCGGCGGTCTATTTGGGAATTGCCCAAGCAGCGCGTGATGCCGC
CCGCGATTATGCCCGTGAACGTCGCCCAACCGCCTTGGCTGGCAAAGCGATTAGCGAACTGGAATCGATTCAACGCCAGC
TTGGTAAGGTCGAGCAATTATTGTTGAGTGCGCGAAGTTTGCTCTACCAAACCGCTCAATTGTGGGAACAAGCGCCTTCC
GAACGTAATAATTTGCGGCCACTAATTGCCACAACCAAAGCCACAGCGATTGAGCATGCGATCGCCGCAGTTGAGCAAGC
CATGATTGTGGTTGGTGGCGCTTCGCTCTCGCCGGATTTGGCCTTAGAGCGCTATGCCCGTGATGTGCGAGCTGGTTTGT
TTCATCCGCCGACGATGGATGCAGCCTTGGTTGGCTTGGGTGCGTGGTTGGTTGAATAA

Upstream 100 bases:

>100_bases
ACAAATTCGACAATCATCACTGCTAAGTTAATAATTTGATGAGTGACCATTGGTTTGTGCTAAGCTTTTGAAGGGCAACA
ATTAATTGAGGAATTAACCA

Downstream 100 bases:

>100_bases
CTATTTTTGATGGCGACTGGCCCAGCCTTCGATCGCATCGGCGACTAAGGGCCAAGCTGGGTCAAACATCAAATCGTGGG
CGGCCTGTGGCACGACGATC

Product: acyl-CoA dehydrogenase type 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MTIDLLHRGLTERQRGFVQLGQDLAALIKPSAGLHDQAASFPFEHLSAFFAARYQALSVPAEFGGHGASLFEAILAQEQL
AYGDGSLALVMAMPIHVLGGIIEGGAWQPSQIERISRLVVDQSIVLNSAASEREMGSPARGGLFATVARQVEGGWLLHGR
KIYTTGAPALTHALISATIADTSDTAIFLVDLKQVGITIEPTWNGTAMRAARNDDIVLDAVFVAEANLVQRRQPGLVDPS
RNNAGAWFQLNMAAVYLGIAQAARDAARDYARERRPTALAGKAISELESIQRQLGKVEQLLLSARSLLYQTAQLWEQAPS
ERNNLRPLIATTKATAIEHAIAAVEQAMIVVGGASLSPDLALERYARDVRAGLFHPPTMDAALVGLGAWLVE

Sequences:

>Translated_392_residues
MTIDLLHRGLTERQRGFVQLGQDLAALIKPSAGLHDQAASFPFEHLSAFFAARYQALSVPAEFGGHGASLFEAILAQEQL
AYGDGSLALVMAMPIHVLGGIIEGGAWQPSQIERISRLVVDQSIVLNSAASEREMGSPARGGLFATVARQVEGGWLLHGR
KIYTTGAPALTHALISATIADTSDTAIFLVDLKQVGITIEPTWNGTAMRAARNDDIVLDAVFVAEANLVQRRQPGLVDPS
RNNAGAWFQLNMAAVYLGIAQAARDAARDYARERRPTALAGKAISELESIQRQLGKVEQLLLSARSLLYQTAQLWEQAPS
ERNNLRPLIATTKATAIEHAIAAVEQAMIVVGGASLSPDLALERYARDVRAGLFHPPTMDAALVGLGAWLVE
>Mature_391_residues
TIDLLHRGLTERQRGFVQLGQDLAALIKPSAGLHDQAASFPFEHLSAFFAARYQALSVPAEFGGHGASLFEAILAQEQLA
YGDGSLALVMAMPIHVLGGIIEGGAWQPSQIERISRLVVDQSIVLNSAASEREMGSPARGGLFATVARQVEGGWLLHGRK
IYTTGAPALTHALISATIADTSDTAIFLVDLKQVGITIEPTWNGTAMRAARNDDIVLDAVFVAEANLVQRRQPGLVDPSR
NNAGAWFQLNMAAVYLGIAQAARDAARDYARERRPTALAGKAISELESIQRQLGKVEQLLLSARSLLYQTAQLWEQAPSE
RNNLRPLIATTKATAIEHAIAAVEQAMIVVGGASLSPDLALERYARDVRAGLFHPPTMDAALVGLGAWLVE

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=369, Percent_Identity=26.0162601626016, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI4501859, Length=358, Percent_Identity=25.6983240223464, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI4557231, Length=376, Percent_Identity=25.2659574468085, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI187960098, Length=376, Percent_Identity=25.2659574468085, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI87081958, Length=344, Percent_Identity=24.4186046511628, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17508101, Length=365, Percent_Identity=22.7397260273973, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17506239, Length=385, Percent_Identity=22.8571428571429, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17538396, Length=326, Percent_Identity=23.0061349693252, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21356377, Length=349, Percent_Identity=25.5014326647564, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24646207, Length=362, Percent_Identity=24.585635359116, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24666513, Length=358, Percent_Identity=24.0223463687151, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42050; Mature: 41918

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDLLHRGLTERQRGFVQLGQDLAALIKPSAGLHDQAASFPFEHLSAFFAARYQALSVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
AEFGGHGASLFEAILAQEQLAYGDGSLALVMAMPIHVLGGIIEGGAWQPSQIERISRLVV
HHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
DQSIVLNSAASEREMGSPARGGLFATVARQVEGGWLLHGRKIYTTGAPALTHALISATIA
HHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCEEEECCCHHHHHHHHHHHHC
DTSDTAIFLVDLKQVGITIEPTWNGTAMRAARNDDIVLDAVFVAEANLVQRRQPGLVDPS
CCCCCEEEEEEEECCCEEEEECCCCCEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCCC
RNNAGAWFQLNMAAVYLGIAQAARDAARDYARERRPTALAGKAISELESIQRQLGKVEQL
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLSARSLLYQTAQLWEQAPSERNNLRPLIATTKATAIEHAIAAVEQAMIVVGGASLSPDL
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEECCCCCHHH
ALERYARDVRAGLFHPPTMDAALVGLGAWLVE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIDLLHRGLTERQRGFVQLGQDLAALIKPSAGLHDQAASFPFEHLSAFFAARYQALSVP
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
AEFGGHGASLFEAILAQEQLAYGDGSLALVMAMPIHVLGGIIEGGAWQPSQIERISRLVV
HHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
DQSIVLNSAASEREMGSPARGGLFATVARQVEGGWLLHGRKIYTTGAPALTHALISATIA
HHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCEEEECCCHHHHHHHHHHHHC
DTSDTAIFLVDLKQVGITIEPTWNGTAMRAARNDDIVLDAVFVAEANLVQRRQPGLVDPS
CCCCCEEEEEEEECCCEEEEECCCCCEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCCC
RNNAGAWFQLNMAAVYLGIAQAARDAARDYARERRPTALAGKAISELESIQRQLGKVEQL
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLSARSLLYQTAQLWEQAPSERNNLRPLIATTKATAIEHAIAAVEQAMIVVGGASLSPDL
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEECCCCCHHH
ALERYARDVRAGLFHPPTMDAALVGLGAWLVE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]