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The map label for this gene is popC [H]

Identifier: 159898578

GI number: 159898578

Start: 2566000

End: 2567679

Strand: Direct

Name: popC [H]

Synonym: Haur_2056

Alternate gene names: 159898578

Gene position: 2566000-2567679 (Clockwise)

Preceding gene: 159898577

Following gene: 159898579

Centisome position: 40.43

GC content: 57.32

Gene sequence:

>1680_bases
ATGATGCCGTCTTCGTTTGATCCGTTCGATGGTCGCCTGTATCCACGGCGTACCCCATCCCAGACCATGCTTGAGTATCA
GCATTTAGATCTTGCGGTTGTGCCATCGCCGCTGTGCCCGCAGCGTCCGATTACCTCTCTTGATCTTTCCCATAATCCGC
TGGTCACATGGCCGAGCGAAACGGCTGCATTGCCATCCCTCACCCGATTAAATCTTGCCCATACCACGCTCACTCAGCTT
CCCGACCATCTTCGCGCGTGTACGCAGCTGGAAGAACTCTATCTGTCAGGGTGTCCGCTGGAATGTCTGCCGTCGTGGCT
TAGCGAACTTCCCCACCTGCGCGTGCTTGATCTGTCGCATACGCGCCTCACCATGGTGCCTGATGTCGTGCGTTCGCTGC
CATCCCTCCAGGTGCTCAGTCTTTCCGGGCTTCCCCTTGCAGCCCTGCCGCCGTGGCTCGATGCGTGCGCCCTCCACATG
CTGTTCCTGCGGTCATTGACGGCATGTGACTTAAGCAGGGTGCGGGCTTGTTCGACGCTCGAATACCTTGATCTCGGACA
CCTGGACTTGACCCAGGTTCCCGACTGGATTCAGGGATTACCCCGATTACAGCAGCTGGATCTCTCGGACAATCCGATCA
CGGAGCTTCCCGCGTGGGTTGGCGATCTGCCGCTCACGACGCTCCATCTTGCCCAGACGCGACTTCAGCACCGTCCCGAT
TGGGAGGCATGGACGATGCTGCGTGACCTGAACCTCAGCGGAATGACCCATGATCCTGCCGTCTTTGCGGGGGCATTTCC
CGCATCCTTGACAAGCCTGAAGCTGTACGACACGGCCTTAACCGCAATCCCTCCCTTCGTTCGCAACCTCCAGCATCTTG
AAACGCTCCGGTTTGACAACAATGCATCCTTGTCGCTTCCAGCATGGCTCCTGGAGGAGTGCCCATTAAAAACGCTCGAA
CTGATCAACACCCACATCACCGAAATTGCCCCGGTCGCGCAGCCCATCGCCTTAGAACACCTGATCATCACGGCTGGCCG
TCTGCCCACGTGGCCGACGCTCCTTGACTATACGCCACACCTGCGGACACTCGATTTGTCGGAAACGCGGATCGTCGATG
CCACCTGTCCATCGCCGTGTGTGCTTCCCCGATTAGTAACGCTCGATCTTCAAGGCGATGCGATCGCGCAGCTGCTCCCG
CAGCTGGTCGTTCCCATGCTGCAACGATTGACCATCGCCAACTGTTGGGACGCAGACCTAACCGCCGTGCTTCAGCAGGT
CGGTCAGGTGAAGAATCTTGCCATCTTAAACTGTTCAGGGACGGTACCGGAGGGGCTGCGATCATGGACCCACCTCCAAA
CACTGAATATGGGTCATAATGGGTTGCGTGAGCTACCACGTTGGATCAGCGAATTGGAACACCTTGAATCGCTCAACCTC
GCCTATAATGATCTTGCACGACTCCCGCTCGCCGTGCGGGAGCTTTCGCAGCTACATACGCTCGATATCACGGCGAATCC
GCTGCGGAGCTTTCCTGATTGGCTCCATACCATGCCACAGCTGCATGCTATCGAGTTTCAATTTCCACCGGATGACCTCA
CCCTGCATGATCATCAATTGCAATTTCTGGCCGCTGGAGTGCGCTGCAATGTCCGTTCACCGCGACCACGGAAAGCTTAA

Upstream 100 bases:

>100_bases
ATGCCGCACCCACAGCAACGATTGATTCGACGAATAATCAATTCACCACCCTTGCCATGAGGGACGTAACGGCAAGATGG
GCGAAGGAAGAAGGCCCACG

Downstream 100 bases:

>100_bases
GCGATGCGCCAAACGAAACCAGCGCTCACGACGGTACTGGTTTTCTTGTGTCCAGTATCCTTCACAAGCATGGAAACCAA
TCCACCCCTTGTCGAAACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MMPSSFDPFDGRLYPRRTPSQTMLEYQHLDLAVVPSPLCPQRPITSLDLSHNPLVTWPSETAALPSLTRLNLAHTTLTQL
PDHLRACTQLEELYLSGCPLECLPSWLSELPHLRVLDLSHTRLTMVPDVVRSLPSLQVLSLSGLPLAALPPWLDACALHM
LFLRSLTACDLSRVRACSTLEYLDLGHLDLTQVPDWIQGLPRLQQLDLSDNPITELPAWVGDLPLTTLHLAQTRLQHRPD
WEAWTMLRDLNLSGMTHDPAVFAGAFPASLTSLKLYDTALTAIPPFVRNLQHLETLRFDNNASLSLPAWLLEECPLKTLE
LINTHITEIAPVAQPIALEHLIITAGRLPTWPTLLDYTPHLRTLDLSETRIVDATCPSPCVLPRLVTLDLQGDAIAQLLP
QLVVPMLQRLTIANCWDADLTAVLQQVGQVKNLAILNCSGTVPEGLRSWTHLQTLNMGHNGLRELPRWISELEHLESLNL
AYNDLARLPLAVRELSQLHTLDITANPLRSFPDWLHTMPQLHAIEFQFPPDDLTLHDHQLQFLAAGVRCNVRSPRPRKA

Sequences:

>Translated_559_residues
MMPSSFDPFDGRLYPRRTPSQTMLEYQHLDLAVVPSPLCPQRPITSLDLSHNPLVTWPSETAALPSLTRLNLAHTTLTQL
PDHLRACTQLEELYLSGCPLECLPSWLSELPHLRVLDLSHTRLTMVPDVVRSLPSLQVLSLSGLPLAALPPWLDACALHM
LFLRSLTACDLSRVRACSTLEYLDLGHLDLTQVPDWIQGLPRLQQLDLSDNPITELPAWVGDLPLTTLHLAQTRLQHRPD
WEAWTMLRDLNLSGMTHDPAVFAGAFPASLTSLKLYDTALTAIPPFVRNLQHLETLRFDNNASLSLPAWLLEECPLKTLE
LINTHITEIAPVAQPIALEHLIITAGRLPTWPTLLDYTPHLRTLDLSETRIVDATCPSPCVLPRLVTLDLQGDAIAQLLP
QLVVPMLQRLTIANCWDADLTAVLQQVGQVKNLAILNCSGTVPEGLRSWTHLQTLNMGHNGLRELPRWISELEHLESLNL
AYNDLARLPLAVRELSQLHTLDITANPLRSFPDWLHTMPQLHAIEFQFPPDDLTLHDHQLQFLAAGVRCNVRSPRPRKA
>Mature_559_residues
MMPSSFDPFDGRLYPRRTPSQTMLEYQHLDLAVVPSPLCPQRPITSLDLSHNPLVTWPSETAALPSLTRLNLAHTTLTQL
PDHLRACTQLEELYLSGCPLECLPSWLSELPHLRVLDLSHTRLTMVPDVVRSLPSLQVLSLSGLPLAALPPWLDACALHM
LFLRSLTACDLSRVRACSTLEYLDLGHLDLTQVPDWIQGLPRLQQLDLSDNPITELPAWVGDLPLTTLHLAQTRLQHRPD
WEAWTMLRDLNLSGMTHDPAVFAGAFPASLTSLKLYDTALTAIPPFVRNLQHLETLRFDNNASLSLPAWLLEECPLKTLE
LINTHITEIAPVAQPIALEHLIITAGRLPTWPTLLDYTPHLRTLDLSETRIVDATCPSPCVLPRLVTLDLQGDAIAQLLP
QLVVPMLQRLTIANCWDADLTAVLQQVGQVKNLAILNCSGTVPEGLRSWTHLQTLNMGHNGLRELPRWISELEHLESLNL
AYNDLARLPLAVRELSQLHTLDITANPLRSFPDWLHTMPQLHAIEFQFPPDDLTLHDHQLQFLAAGVRCNVRSPRPRKA

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI238908508, Length=513, Percent_Identity=24.7563352826511, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI21361633, Length=522, Percent_Identity=26.0536398467433, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI65301141, Length=508, Percent_Identity=24.8031496062992, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI122937315, Length=353, Percent_Identity=26.628895184136, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI41281398, Length=481, Percent_Identity=25.3638253638254, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI110825984, Length=289, Percent_Identity=32.1799307958478, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI95113664, Length=351, Percent_Identity=27.0655270655271, Blast_Score=84, Evalue=5e-16,
Organism=Homo sapiens, GI4503743, Length=270, Percent_Identity=31.8518518518519, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI291219891, Length=487, Percent_Identity=23.8193018480493, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI8923909, Length=363, Percent_Identity=23.9669421487603, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI55770895, Length=363, Percent_Identity=23.9669421487603, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI16904383, Length=221, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=2e-14,
Organism=Homo sapiens, GI45827731, Length=426, Percent_Identity=27.9342723004695, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI45827729, Length=426, Percent_Identity=27.9342723004695, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI197333706, Length=200, Percent_Identity=29.5, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI34222199, Length=200, Percent_Identity=29.5, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI19923729, Length=209, Percent_Identity=28.7081339712919, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI187829877, Length=212, Percent_Identity=29.7169811320755, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI62241040, Length=212, Percent_Identity=29.7169811320755, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI187829871, Length=212, Percent_Identity=29.7169811320755, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI6912638, Length=185, Percent_Identity=31.3513513513514, Blast_Score=69, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71981160, Length=430, Percent_Identity=25.8139534883721, Blast_Score=102, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71981152, Length=430, Percent_Identity=25.8139534883721, Blast_Score=102, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71991525, Length=346, Percent_Identity=29.4797687861272, Blast_Score=99, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71991531, Length=341, Percent_Identity=29.6187683284457, Blast_Score=99, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71985928, Length=549, Percent_Identity=24.408014571949, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71980576, Length=505, Percent_Identity=24.7524752475248, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25143890, Length=368, Percent_Identity=25, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17552452, Length=181, Percent_Identity=30.3867403314917, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71993783, Length=239, Percent_Identity=28.0334728033473, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71993778, Length=239, Percent_Identity=28.0334728033473, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17510303, Length=186, Percent_Identity=30.6451612903226, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI221379725, Length=529, Percent_Identity=26.6540642722117, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI221379722, Length=529, Percent_Identity=26.6540642722117, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24650336, Length=438, Percent_Identity=26.4840182648402, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI62472958, Length=438, Percent_Identity=26.4840182648402, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007092, Length=438, Percent_Identity=26.4840182648402, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650334, Length=438, Percent_Identity=26.4840182648402, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650332, Length=438, Percent_Identity=26.4840182648402, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650330, Length=438, Percent_Identity=26.4840182648402, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19922294, Length=326, Percent_Identity=26.0736196319018, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281362651, Length=438, Percent_Identity=26.4840182648402, Blast_Score=80, Evalue=5e-15,
Organism=Drosophila melanogaster, GI281362653, Length=438, Percent_Identity=26.4840182648402, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI281362655, Length=438, Percent_Identity=26.4840182648402, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI281362657, Length=438, Percent_Identity=26.4840182648402, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI221500776, Length=518, Percent_Identity=25.6756756756757, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21358607, Length=572, Percent_Identity=24.8251748251748, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17933612, Length=315, Percent_Identity=31.1111111111111, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI161078264, Length=208, Percent_Identity=30.2884615384615, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45551891, Length=208, Percent_Identity=30.2884615384615, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161078262, Length=208, Percent_Identity=30.2884615384615, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21358045, Length=208, Percent_Identity=30.2884615384615, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161078260, Length=208, Percent_Identity=30.2884615384615, Blast_Score=66, Evalue=7e-11,
Organism=Drosophila melanogaster, GI18858105, Length=185, Percent_Identity=31.8918918918919, Blast_Score=66, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 62630; Mature: 62630

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPSSFDPFDGRLYPRRTPSQTMLEYQHLDLAVVPSPLCPQRPITSLDLSHNPLVTWPSE
CCCCCCCCCCCEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
TAALPSLTRLNLAHTTLTQLPDHLRACTQLEELYLSGCPLECLPSWLSELPHLRVLDLSH
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCC
TRLTMVPDVVRSLPSLQVLSLSGLPLAALPPWLDACALHMLFLRSLTACDLSRVRACSTL
CHHHHHHHHHHCCCCEEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYLDLGHLDLTQVPDWIQGLPRLQQLDLSDNPITELPAWVGDLPLTTLHLAQTRLQHRPD
HHHCCCCCCHHHCCHHHHHCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCC
WEAWTMLRDLNLSGMTHDPAVFAGAFPASLTSLKLYDTALTAIPPFVRNLQHLETLRFDN
HHHHHHHHHCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NASLSLPAWLLEECPLKTLELINTHITEIAPVAQPIALEHLIITAGRLPTWPTLLDYTPH
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
LRTLDLSETRIVDATCPSPCVLPRLVTLDLQGDAIAQLLPQLVVPMLQRLTIANCWDADL
CEEECCCCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TAVLQQVGQVKNLAILNCSGTVPEGLRSWTHLQTLNMGHNGLRELPRWISELEHLESLNL
HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AYNDLARLPLAVRELSQLHTLDITANPLRSFPDWLHTMPQLHAIEFQFPPDDLTLHDHQL
HHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH
QFLAAGVRCNVRSPRPRKA
HHHHHCCEECCCCCCCCCC
>Mature Secondary Structure
MMPSSFDPFDGRLYPRRTPSQTMLEYQHLDLAVVPSPLCPQRPITSLDLSHNPLVTWPSE
CCCCCCCCCCCEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
TAALPSLTRLNLAHTTLTQLPDHLRACTQLEELYLSGCPLECLPSWLSELPHLRVLDLSH
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCC
TRLTMVPDVVRSLPSLQVLSLSGLPLAALPPWLDACALHMLFLRSLTACDLSRVRACSTL
CHHHHHHHHHHCCCCEEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYLDLGHLDLTQVPDWIQGLPRLQQLDLSDNPITELPAWVGDLPLTTLHLAQTRLQHRPD
HHHCCCCCCHHHCCHHHHHCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCC
WEAWTMLRDLNLSGMTHDPAVFAGAFPASLTSLKLYDTALTAIPPFVRNLQHLETLRFDN
HHHHHHHHHCCCCCCCCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NASLSLPAWLLEECPLKTLELINTHITEIAPVAQPIALEHLIITAGRLPTWPTLLDYTPH
CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
LRTLDLSETRIVDATCPSPCVLPRLVTLDLQGDAIAQLLPQLVVPMLQRLTIANCWDADL
CEEECCCCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TAVLQQVGQVKNLAILNCSGTVPEGLRSWTHLQTLNMGHNGLRELPRWISELEHLESLNL
HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AYNDLARLPLAVRELSQLHTLDITANPLRSFPDWLHTMPQLHAIEFQFPPDDLTLHDHQL
HHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH
QFLAAGVRCNVRSPRPRKA
HHHHHCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]