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The map label for this gene is 159898540

Identifier: 159898540

GI number: 159898540

Start: 2506057

End: 2506602

Strand: Direct

Name: 159898540

Synonym: Haur_2016

Alternate gene names: NA

Gene position: 2506057-2506602 (Clockwise)

Preceding gene: 159898539

Following gene: 159898541

Centisome position: 39.49

GC content: 56.78

Gene sequence:

>546_bases
ATGAAGACACACGCTTTGGCACTTCCAGCCACCACCAGCCCACCAGACACGGTTGATTGGCAGGCCGTCTATGCGGCCTT
TCAGCCACGCGTGTATAACCTGTGTCTGTACGCCGTCGGCGACCGCACGCATGCCGAAGATCTGACCTCAACCATCTTTT
TGGAGATTTGGCGCTGTCGAACGCGCTATGTGACGACGAAAGGCGCCATCTCAACATGGATTTTTACGATTGCCCATCGC
GTCGTTGGTCACCACCTGCGGCAAAAGCGTCCGGCTACCCCCCTTACAGAGGCCACCACGCTACCCGATACCACCAACGT
TGAAACGCTGGTGGAACGGCGGGCGGTCATTGCCGCATTGCTCCCGCATTTACGTCAGCTCAGCGTGGAGGAGCATAAGC
TGATTGCGCTCAAGTATGGAGCTGGATTAACGAACCGTGATATTGCCACCGTGCTCGACCTGACCGAATCGACGGTTGGC
ACTCATTTGCATCGACTCGTCGTGCGGTTGCGCCGCGTCTTAGGAGTATACCCTTATGGCGACTAA

Upstream 100 bases:

>100_bases
AATCACTGGGCAAACGTGTTGAAGGACATACTTTTATTGATTGTCGTGCGGTTTCGCCGTCGTATGAGATACATGTGACG
GTTCTGGCAATAATACAAGT

Downstream 100 bases:

>100_bases
CCATGATGACTTTTTGTACCAGTATCAGGAAACTCCTGATCCCGACTTTACGACCCGCCTTCGTGATCAGTTGCTGGCGG
TTGATCGCGTCGAGCGGATA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MKTHALALPATTSPPDTVDWQAVYAAFQPRVYNLCLYAVGDRTHAEDLTSTIFLEIWRCRTRYVTTKGAISTWIFTIAHR
VVGHHLRQKRPATPLTEATTLPDTTNVETLVERRAVIAALLPHLRQLSVEEHKLIALKYGAGLTNRDIATVLDLTESTVG
THLHRLVVRLRRVLGVYPYGD

Sequences:

>Translated_181_residues
MKTHALALPATTSPPDTVDWQAVYAAFQPRVYNLCLYAVGDRTHAEDLTSTIFLEIWRCRTRYVTTKGAISTWIFTIAHR
VVGHHLRQKRPATPLTEATTLPDTTNVETLVERRAVIAALLPHLRQLSVEEHKLIALKYGAGLTNRDIATVLDLTESTVG
THLHRLVVRLRRVLGVYPYGD
>Mature_181_residues
MKTHALALPATTSPPDTVDWQAVYAAFQPRVYNLCLYAVGDRTHAEDLTSTIFLEIWRCRTRYVTTKGAISTWIFTIAHR
VVGHHLRQKRPATPLTEATTLPDTTNVETLVERRAVIAALLPHLRQLSVEEHKLIALKYGAGLTNRDIATVLDLTESTVG
THLHRLVVRLRRVLGVYPYGD

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20346; Mature: 20346

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00622 HTH_LUXR_1 ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTHALALPATTSPPDTVDWQAVYAAFQPRVYNLCLYAVGDRTHAEDLTSTIFLEIWRCR
CCCCEEECCCCCCCCCCCHHHHHHHHHCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHH
TRYVTTKGAISTWIFTIAHRVVGHHLRQKRPATPLTEATTLPDTTNVETLVERRAVIAAL
HHEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LPHLRQLSVEEHKLIALKYGAGLTNRDIATVLDLTESTVGTHLHRLVVRLRRVLGVYPYG
HHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
D
C
>Mature Secondary Structure
MKTHALALPATTSPPDTVDWQAVYAAFQPRVYNLCLYAVGDRTHAEDLTSTIFLEIWRCR
CCCCEEECCCCCCCCCCCHHHHHHHHHCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHH
TRYVTTKGAISTWIFTIAHRVVGHHLRQKRPATPLTEATTLPDTTNVETLVERRAVIAAL
HHEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LPHLRQLSVEEHKLIALKYGAGLTNRDIATVLDLTESTVGTHLHRLVVRLRRVLGVYPYG
HHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA