Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

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The map label for this gene is 159898514

Identifier: 159898514

GI number: 159898514

Start: 2450884

End: 2453481

Strand: Direct

Name: 159898514

Synonym: Haur_1990

Alternate gene names: NA

Gene position: 2450884-2453481 (Clockwise)

Preceding gene: 159898513

Following gene: 159898515

Centisome position: 38.62

GC content: 50.69

Gene sequence:

>2598_bases
ATGACAAATCCATTTGCGCAAGCATTAACTCTTTATTTACCACTTGATAGCATGGGCATCAACAACACCAGCGTCAGCGA
TCTTTCGGGCAACCGTAATCATGGCACAATTCACGGCAATGTGATGGTTGTGCCTGATGATCAGGTTGGCAGTTGCGCCT
GTTTTGATGGTCAAAGTTGGGTCGAGTTAGCCAATCCATTTGCCAGTGCCAGCGATTTTACGCTGGCGTTGTGGGTGCGG
CCAACCCGCTTCGATGGAGCCTACCATGGTTTTATTGGCAAGCAAGCCGCCGAAGATTTGTATCGCAAACCAAGTATGTG
GGTGATGGGTGATGGTGGTTTGCATCTTGATAGTTACTCGTCTGATGGAACTCGCTTTCATTATGAATTAGCAGGCTTTT
TTGCTCAGCCAAATGAGTGGGTGCATGTGGCCTGGGTTAAATCGGGCACGGCCTATACAATCTATCGCAATGGGGTGGCC
TTTACCGAACGACCAGCCCCTGCCGAAGTCTATGTGCCAGCCAGTAGCTATTGGCTTGGCAAAGTCGATAATTTGTTTGA
TGGATGCTTGGCGCATGTGCGAATGTACAATCAGGCGCTTGATCCTGCTGCGGTGGCCGATATTGCCGCCCATGATCGGG
TCGCTCGCATGGTGTTTCGGGCAAGTTATCCGCTTGATTTCAATTTGCTGAATTCGCAGCAAGAGCCAAATCTCAACCCT
GGCACAAACCCATTGACCTTGACCCTGACCAATGCCAGCGCCCAAAGCATCGAATTATCGCCGCTTGATCGCAGTGCTCC
AGCGCAACAGCAACACTTCAGTTTTAGTTTTCGCCCCAATTTATTGGCAATTAACACTGGAATTGCAATTGATCATCCGG
CTTGGCAGGTTAGCACTCAGTCAATGAGCGATGGCCGCATGAATATCCTTGTTCGCTCGACCGAGGCTCAAACGTTAACT
CCCAATCAAACCTTGCGCTTTGCACTGAGTGGGATTACGGTTTTGCCTCAAGATGGCAGCCACTCAACCCAAATTGAAAT
GCAATATAGTAATTTACGCTATGTTGGTGAAATAAGTCTGTTAAACGGAAGTCGTCTGCAACGCATTAGTATTAGTACCG
ATGATAGTGCCTTGGATTTGCCGTTGCACCTGAGTTTGAGCAACGGTGCAACAATTCTCAACACCAACCAGCCCAACCAT
TTAGTTGCCCGAATAAGTAACACCTCAACCCATAGCACATTGCACTTTAATCAATCCGAGCCACAGAGCCACTTAATTGT
GCGGTTTGATGGCAGTGCCAGTGCTGAGCCATGGGCCTTGGCAACGCCCGACCAAATTAATGCGATTACGATTGAGGTAG
CGGGCTGGGATGTGCAACGTCAACAGCAAGCTGGTCAAACGACGTGGGTTTGTCGTCCACTCAGCGATGTGGCTTTGGCT
CCAGGCGCAGCGCTTGACTTACAGATCAACAATATCGTGACGACCCACCCGCAAGGCAATACGACCCTGTATGTTGTGGT
GCACGAGCTGCAAGGTTTCAACGATACCACCTTAACGACGACAATTACCAAAACCTCGATGAACACTATTAGTAACGCTG
GGCAAACTCAAAATACGCTTGCACTTGGCGAAAATGGCTTTATCAGCGGAGCGGGCTACAACACCTTGGTAGCTCAAACG
ACACTGAGCGGTGGTGGTCGAATTAGCTGGCGCAACCGTAAAGTTCGCTGGACGCAGCGCTTTTTGGCGATTAGTATGGG
GCATACTGGCTTTCCGGTTGGACACTTTAATATTGCATATCCAACTGCACCAATTCCTGCTGCCGATTGCTACGATAACC
TCGAACGACCAGTGAGTGATGGCATCGAATTGCGTGATTGGGAAGCGTTATATGCGATTTATACTCCCAGCACCAGCCCC
AGTACCACCAGTTTACGAATTGTGCATTATGCCAAGCCTTTCAATCTTGAAGGCCGGGCAGTGCTGGTGGCCGTTTTTAA
TGCTGATGATCGCACCTTGAAGCTTGGCTCTGGCCTGACGTTGAGCCATCAAGGAACCTATTCCAATGGCAGCCCAATTC
CATGTGGCACCATTCAAATGTGGTCGGGCATGGAAGTGCCTGAAGGCTGGGCGATTTGTGATGGCCGCGAAGCCAACGGC
TTGCGCACCCCTGATTTGCGCAACCGCTTTATTGTTGGAGCTGGGGCCAATTACGATAGTGGCAACCTCAGTGTTTATGG
TACGAATCAAGGTACAACTGGCGGCAGCGATGTAGTGGCATTAACCCTCGATCAAATGCCGCGCCACACCCATGGCGGTT
CAACCAATGCCGCAGGCGACCATAGCCATTGGGTTGAAGGCACTGATGCCGATGGCTTAGCCAAACGTCGCCGTCACCAT
TGGGGCGATACTACCGTCGATATGGGTTTTGGTGGTGGCCGCAACGCCGACCCTAACGATGAACGCTGGCGTGGCCGGGT
CAATACCGATAATGCTGGTACCCATAGCCACGGCCTGATGATTGGTGAGGTTGGTGGTAGCCAAGCCCACGAAAATCGCC
CGCCATTCTATGCGCTCGCCTTCATTATGAAAGTTTAA

Upstream 100 bases:

>100_bases
TGGCCAAGCCAGCTTTGCCCGCCGCTTACAACTGCGCGAAGGGTGGCTCCGGCTGCAACCGCAAGCTCAGCAAATTTAGC
TTTTAGGAGCATTATTAATT

Downstream 100 bases:

>100_bases
TTGAGGAGTTGCCAACTATGCCCCAAGAAAAATTTGATCTGTACTTTTTGGCAATGGGTCAGGGTGATTGCACCTTGGTT
AAATGCCCCGACGATAAAGT

Product: tail collar domain-containing protein

Products: NA

Alternate protein names: Phage Tail Collar Domain Family; Phage Tail Protein

Number of amino acids: Translated: 865; Mature: 864

Protein sequence:

>865_residues
MTNPFAQALTLYLPLDSMGINNTSVSDLSGNRNHGTIHGNVMVVPDDQVGSCACFDGQSWVELANPFASASDFTLALWVR
PTRFDGAYHGFIGKQAAEDLYRKPSMWVMGDGGLHLDSYSSDGTRFHYELAGFFAQPNEWVHVAWVKSGTAYTIYRNGVA
FTERPAPAEVYVPASSYWLGKVDNLFDGCLAHVRMYNQALDPAAVADIAAHDRVARMVFRASYPLDFNLLNSQQEPNLNP
GTNPLTLTLTNASAQSIELSPLDRSAPAQQQHFSFSFRPNLLAINTGIAIDHPAWQVSTQSMSDGRMNILVRSTEAQTLT
PNQTLRFALSGITVLPQDGSHSTQIEMQYSNLRYVGEISLLNGSRLQRISISTDDSALDLPLHLSLSNGATILNTNQPNH
LVARISNTSTHSTLHFNQSEPQSHLIVRFDGSASAEPWALATPDQINAITIEVAGWDVQRQQQAGQTTWVCRPLSDVALA
PGAALDLQINNIVTTHPQGNTTLYVVVHELQGFNDTTLTTTITKTSMNTISNAGQTQNTLALGENGFISGAGYNTLVAQT
TLSGGGRISWRNRKVRWTQRFLAISMGHTGFPVGHFNIAYPTAPIPAADCYDNLERPVSDGIELRDWEALYAIYTPSTSP
STTSLRIVHYAKPFNLEGRAVLVAVFNADDRTLKLGSGLTLSHQGTYSNGSPIPCGTIQMWSGMEVPEGWAICDGREANG
LRTPDLRNRFIVGAGANYDSGNLSVYGTNQGTTGGSDVVALTLDQMPRHTHGGSTNAAGDHSHWVEGTDADGLAKRRRHH
WGDTTVDMGFGGGRNADPNDERWRGRVNTDNAGTHSHGLMIGEVGGSQAHENRPPFYALAFIMKV

Sequences:

>Translated_865_residues
MTNPFAQALTLYLPLDSMGINNTSVSDLSGNRNHGTIHGNVMVVPDDQVGSCACFDGQSWVELANPFASASDFTLALWVR
PTRFDGAYHGFIGKQAAEDLYRKPSMWVMGDGGLHLDSYSSDGTRFHYELAGFFAQPNEWVHVAWVKSGTAYTIYRNGVA
FTERPAPAEVYVPASSYWLGKVDNLFDGCLAHVRMYNQALDPAAVADIAAHDRVARMVFRASYPLDFNLLNSQQEPNLNP
GTNPLTLTLTNASAQSIELSPLDRSAPAQQQHFSFSFRPNLLAINTGIAIDHPAWQVSTQSMSDGRMNILVRSTEAQTLT
PNQTLRFALSGITVLPQDGSHSTQIEMQYSNLRYVGEISLLNGSRLQRISISTDDSALDLPLHLSLSNGATILNTNQPNH
LVARISNTSTHSTLHFNQSEPQSHLIVRFDGSASAEPWALATPDQINAITIEVAGWDVQRQQQAGQTTWVCRPLSDVALA
PGAALDLQINNIVTTHPQGNTTLYVVVHELQGFNDTTLTTTITKTSMNTISNAGQTQNTLALGENGFISGAGYNTLVAQT
TLSGGGRISWRNRKVRWTQRFLAISMGHTGFPVGHFNIAYPTAPIPAADCYDNLERPVSDGIELRDWEALYAIYTPSTSP
STTSLRIVHYAKPFNLEGRAVLVAVFNADDRTLKLGSGLTLSHQGTYSNGSPIPCGTIQMWSGMEVPEGWAICDGREANG
LRTPDLRNRFIVGAGANYDSGNLSVYGTNQGTTGGSDVVALTLDQMPRHTHGGSTNAAGDHSHWVEGTDADGLAKRRRHH
WGDTTVDMGFGGGRNADPNDERWRGRVNTDNAGTHSHGLMIGEVGGSQAHENRPPFYALAFIMKV
>Mature_864_residues
TNPFAQALTLYLPLDSMGINNTSVSDLSGNRNHGTIHGNVMVVPDDQVGSCACFDGQSWVELANPFASASDFTLALWVRP
TRFDGAYHGFIGKQAAEDLYRKPSMWVMGDGGLHLDSYSSDGTRFHYELAGFFAQPNEWVHVAWVKSGTAYTIYRNGVAF
TERPAPAEVYVPASSYWLGKVDNLFDGCLAHVRMYNQALDPAAVADIAAHDRVARMVFRASYPLDFNLLNSQQEPNLNPG
TNPLTLTLTNASAQSIELSPLDRSAPAQQQHFSFSFRPNLLAINTGIAIDHPAWQVSTQSMSDGRMNILVRSTEAQTLTP
NQTLRFALSGITVLPQDGSHSTQIEMQYSNLRYVGEISLLNGSRLQRISISTDDSALDLPLHLSLSNGATILNTNQPNHL
VARISNTSTHSTLHFNQSEPQSHLIVRFDGSASAEPWALATPDQINAITIEVAGWDVQRQQQAGQTTWVCRPLSDVALAP
GAALDLQINNIVTTHPQGNTTLYVVVHELQGFNDTTLTTTITKTSMNTISNAGQTQNTLALGENGFISGAGYNTLVAQTT
LSGGGRISWRNRKVRWTQRFLAISMGHTGFPVGHFNIAYPTAPIPAADCYDNLERPVSDGIELRDWEALYAIYTPSTSPS
TTSLRIVHYAKPFNLEGRAVLVAVFNADDRTLKLGSGLTLSHQGTYSNGSPIPCGTIQMWSGMEVPEGWAICDGREANGL
RTPDLRNRFIVGAGANYDSGNLSVYGTNQGTTGGSDVVALTLDQMPRHTHGGSTNAAGDHSHWVEGTDADGLAKRRRHHW
GDTTVDMGFGGGRNADPNDERWRGRVNTDNAGTHSHGLMIGEVGGSQAHENRPPFYALAFIMKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94008; Mature: 93876

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPFAQALTLYLPLDSMGINNTSVSDLSGNRNHGTIHGNVMVVPDDQVGSCACFDGQSW
CCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEECCCCH
VELANPFASASDFTLALWVRPTRFDGAYHGFIGKQAAEDLYRKPSMWVMGDGGLHLDSYS
HHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEECCCC
SDGTRFHYELAGFFAQPNEWVHVAWVKSGTAYTIYRNGVAFTERPAPAEVYVPASSYWLG
CCCCEEEEEEEEEECCCCCEEEEEEEECCCEEEEEECCEEEECCCCCCEEEECCCCCCCC
KVDNLFDGCLAHVRMYNQALDPAAVADIAAHDRVARMVFRASYPLDFNLLNSQQEPNLNP
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
GTNPLTLTLTNASAQSIELSPLDRSAPAQQQHFSFSFRPNLLAINTGIAIDHPAWQVSTQ
CCCEEEEEEECCCCCEEEECCCCCCCCCCHHHEEEEECCCEEEEECCEEECCCCEEEECC
SMSDGRMNILVRSTEAQTLTPNQTLRFALSGITVLPQDGSHSTQIEMQYSNLRYVGEISL
CCCCCEEEEEEEECCCCEECCCCEEEEEEECEEEEECCCCCCEEEEEEECCEEEEEEEEE
LNGSRLQRISISTDDSALDLPLHLSLSNGATILNTNQPNHLVARISNTSTHSTLHFNQSE
ECCCCEEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCEEEEEEECCCCCEEEEECCCC
PQSHLIVRFDGSASAEPWALATPDQINAITIEVAGWDVQRQQQAGQTTWVCRPLSDVALA
CCCEEEEEECCCCCCCCEEECCCCCCCEEEEEEECCCHHHHHHCCCEEEEEECCHHHHCC
PGAALDLQINNIVTTHPQGNTTLYVVVHELQGFNDTTLTTTITKTSMNTISNAGQTQNTL
CCCEEEEEECCEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEECHHHHHHCCCCCCCEE
ALGENGFISGAGYNTLVAQTTLSGGGRISWRNRKVRWTQRFLAISMGHTGFPVGHFNIAY
EECCCCEEECCCCCEEEEEEECCCCCEEEECCCEEEEEEEEEEEEECCCCCCCCEEEEEC
PTAPIPAADCYDNLERPVSDGIELRDWEALYAIYTPSTSPSTTSLRIVHYAKPFNLEGRA
CCCCCCHHHHHHHHCCHHHCCCEEEECEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCE
VLVAVFNADDRTLKLGSGLTLSHQGTYSNGSPIPCGTIQMWSGMEVPEGWAICDGREANG
EEEEEECCCCCEEEECCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCC
LRTPDLRNRFIVGAGANYDSGNLSVYGTNQGTTGGSDVVALTLDQMPRHTHGGSTNAAGD
CCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
HSHWVEGTDADGLAKRRRHHWGDTTVDMGFGGGRNADPNDERWRGRVNTDNAGTHSHGLM
CCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE
IGEVGGSQAHENRPPFYALAFIMKV
EECCCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure 
TNPFAQALTLYLPLDSMGINNTSVSDLSGNRNHGTIHGNVMVVPDDQVGSCACFDGQSW
CCHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEECCCCH
VELANPFASASDFTLALWVRPTRFDGAYHGFIGKQAAEDLYRKPSMWVMGDGGLHLDSYS
HHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEECCCC
SDGTRFHYELAGFFAQPNEWVHVAWVKSGTAYTIYRNGVAFTERPAPAEVYVPASSYWLG
CCCCEEEEEEEEEECCCCCEEEEEEEECCCEEEEEECCEEEECCCCCCEEEECCCCCCCC
KVDNLFDGCLAHVRMYNQALDPAAVADIAAHDRVARMVFRASYPLDFNLLNSQQEPNLNP
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
GTNPLTLTLTNASAQSIELSPLDRSAPAQQQHFSFSFRPNLLAINTGIAIDHPAWQVSTQ
CCCEEEEEEECCCCCEEEECCCCCCCCCCHHHEEEEECCCEEEEECCEEECCCCEEEECC
SMSDGRMNILVRSTEAQTLTPNQTLRFALSGITVLPQDGSHSTQIEMQYSNLRYVGEISL
CCCCCEEEEEEEECCCCEECCCCEEEEEEECEEEEECCCCCCEEEEEEECCEEEEEEEEE
LNGSRLQRISISTDDSALDLPLHLSLSNGATILNTNQPNHLVARISNTSTHSTLHFNQSE
ECCCCEEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCEEEEEEECCCCCEEEEECCCC
PQSHLIVRFDGSASAEPWALATPDQINAITIEVAGWDVQRQQQAGQTTWVCRPLSDVALA
CCCEEEEEECCCCCCCCEEECCCCCCCEEEEEEECCCHHHHHHCCCEEEEEECCHHHHCC
PGAALDLQINNIVTTHPQGNTTLYVVVHELQGFNDTTLTTTITKTSMNTISNAGQTQNTL
CCCEEEEEECCEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEECHHHHHHCCCCCCCEE
ALGENGFISGAGYNTLVAQTTLSGGGRISWRNRKVRWTQRFLAISMGHTGFPVGHFNIAY
EECCCCEEECCCCCEEEEEEECCCCCEEEECCCEEEEEEEEEEEEECCCCCCCCEEEEEC
PTAPIPAADCYDNLERPVSDGIELRDWEALYAIYTPSTSPSTTSLRIVHYAKPFNLEGRA
CCCCCCHHHHHHHHCCHHHCCCEEEECEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCE
VLVAVFNADDRTLKLGSGLTLSHQGTYSNGSPIPCGTIQMWSGMEVPEGWAICDGREANG
EEEEEECCCCCEEEECCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCC
LRTPDLRNRFIVGAGANYDSGNLSVYGTNQGTTGGSDVVALTLDQMPRHTHGGSTNAAGD
CCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
HSHWVEGTDADGLAKRRRHHWGDTTVDMGFGGGRNADPNDERWRGRVNTDNAGTHSHGLM
CCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE
IGEVGGSQAHENRPPFYALAFIMKV
EECCCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA