Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159898495

Identifier: 159898495

GI number: 159898495

Start: 2417499

End: 2418059

Strand: Direct

Name: 159898495

Synonym: Haur_1971

Alternate gene names: NA

Gene position: 2417499-2418059 (Clockwise)

Preceding gene: 159898492

Following gene: 159898496

Centisome position: 38.09

GC content: 50.09

Gene sequence:

>561_bases
ATGCTACTTCAGACAAGTTTAAATTGTTGGAAACATCACGCTCGCTGGGTACTCCAGGCTTTGACCACGCTCCAGCCTGA
TGATCAACCACGGTTGCTCCATGCCTTGCAAACAATCGGCAATTCGCAGATGGATTTGTATCTTGGTGATTTAGACCCAG
TAGCTATCGATAGCCAAATTATTGCCCAACTGCAACAGCGTGGGATTGCTGCCCCCACTCACTATGCTGAATGGTTGGCG
AGCAATGGTCACTATCAACTGTTGCAGCTCGATGATCACTCGGAATGGGTGCTACGCTGGGGTGAAATTGACCAACAGCG
GGTGCATTTGCATCCTGCTCGATATAGCCCGTTGAGTGTCCGAGTGCGTGCTCCAGTCTTACGATCAGCCTATGCGATCA
TGGTTTGGCAGGGTTGGTATGGTGGCGATTTATTTGATCTGCAACTGATCAATCGGGTGCGCACAGCATGGTTGCACCTT
AGCCCAATTGCCAAATTGCCGCCAAATGATGGCCTTGCGGCGCTATTGAGCTTACTACGCGAGCTAAACCAGCCAAATTA
A

Upstream 100 bases:

>100_bases
ATTAACAGGTCTTAAAGCAAGCGGGCATGCAACCAACCTTAGTTTATAAAAAAAGCCGGCAGCCATTCATTAAGAAAGAT
TCAAGGGGATTGATTTTAAG

Downstream 100 bases:

>100_bases
CCCCAATCAGCCCCAAAAATTCAGCAATTCGATTATTCCAACGTTTTAGTAATAGCAATGGCTGCGTAGCTACCCCCTAG
GCTATTTCAAGCGGCTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MLLQTSLNCWKHHARWVLQALTTLQPDDQPRLLHALQTIGNSQMDLYLGDLDPVAIDSQIIAQLQQRGIAAPTHYAEWLA
SNGHYQLLQLDDHSEWVLRWGEIDQQRVHLHPARYSPLSVRVRAPVLRSAYAIMVWQGWYGGDLFDLQLINRVRTAWLHL
SPIAKLPPNDGLAALLSLLRELNQPN

Sequences:

>Translated_186_residues
MLLQTSLNCWKHHARWVLQALTTLQPDDQPRLLHALQTIGNSQMDLYLGDLDPVAIDSQIIAQLQQRGIAAPTHYAEWLA
SNGHYQLLQLDDHSEWVLRWGEIDQQRVHLHPARYSPLSVRVRAPVLRSAYAIMVWQGWYGGDLFDLQLINRVRTAWLHL
SPIAKLPPNDGLAALLSLLRELNQPN
>Mature_186_residues
MLLQTSLNCWKHHARWVLQALTTLQPDDQPRLLHALQTIGNSQMDLYLGDLDPVAIDSQIIAQLQQRGIAAPTHYAEWLA
SNGHYQLLQLDDHSEWVLRWGEIDQQRVHLHPARYSPLSVRVRAPVLRSAYAIMVWQGWYGGDLFDLQLINRVRTAWLHL
SPIAKLPPNDGLAALLSLLRELNQPN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21283; Mature: 21283

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLQTSLNCWKHHARWVLQALTTLQPDDQPRLLHALQTIGNSQMDLYLGDLDPVAIDSQI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
IAQLQQRGIAAPTHYAEWLASNGHYQLLQLDDHSEWVLRWGEIDQQRVHLHPARYSPLSV
HHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCEEECCCCCCCEEE
RVRAPVLRSAYAIMVWQGWYGGDLFDLQLINRVRTAWLHLSPIAKLPPNDGLAALLSLLR
EEECHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
ELNQPN
HHCCCC
>Mature Secondary Structure
MLLQTSLNCWKHHARWVLQALTTLQPDDQPRLLHALQTIGNSQMDLYLGDLDPVAIDSQI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
IAQLQQRGIAAPTHYAEWLASNGHYQLLQLDDHSEWVLRWGEIDQQRVHLHPARYSPLSV
HHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCEEECCCCCCCEEE
RVRAPVLRSAYAIMVWQGWYGGDLFDLQLINRVRTAWLHLSPIAKLPPNDGLAALLSLLR
EEECHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
ELNQPN
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA