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The map label for this gene is yqxC [H]

Identifier: 159898450

GI number: 159898450

Start: 2322857

End: 2323660

Strand: Reverse

Name: yqxC [H]

Synonym: Haur_1926

Alternate gene names: 159898450

Gene position: 2323660-2322857 (Counterclockwise)

Preceding gene: 159898452

Following gene: 159898449

Centisome position: 36.61

GC content: 52.24

Gene sequence:

>804_bases
ATGACCAAGGTAAAAAAACACCGTTTGGATGTGTTATTAGTTGAATTACAACTTGCGCCGACCCGTGCCAAGGCTCAAGC
GTTAATTATGGCTGGTGAGGTGATCGTCAATAGCCAAGCCGAAACCAAAGCTGGCACGATGATTGATCCTGCGGCTCAAA
TCACGCTAAAGTCGAGTTTGCCCTATGTTGGGCGGGGTGGTCTCAAGCTTGCCCATGCCCTCGATAGTTTTAATATTAAT
CCTCAGGGCTGCGTAGCGCTTGATGTTGGCGCTTGTACTGGGGGGTTTAGCGATGTGTTGTTACAACGTGATGCCGCCCA
TGTCTATGCAATTGATGTTGGCTACGGCCAACTTGATTGGAAAATTCGCCAAGATCCACGGGTGACCGTGCTTGAACGCA
CCAATATTCGCTATTTGGAGCACCTGCCGCATGCCGAACAACAACCAGCGCCACTCGCCACCTGCGGGGTGGTCGATGTT
TCGTTTATCTCGCTGGGCTTGGTACTACCAGCCATGTTGCGGTTGCTGACAGCCGATGCTTGGATCGTCTGCTTGATCAA
GCCGCAATTCGAGGCTGGCCCAGAGCATGTTGGCAAAGGCGGAATCGTGCGCGACTCGGCGGTGCATCGTCAGGTGATCG
AACGAGTCGCGCAGCAAGCCAACAATTTGGGCTTAGGCTTAACCGGATTGACCCGCTCACCAATTACCGGAGCCGAGGGT
AATATCGAATTTTTGGGCTATTTTCAACGCAACGCGGTTGCAACAATTGCGCTGCCGCAAGCGTTAATTGGGCTAGGTTT
ATGA

Upstream 100 bases:

>100_bases
AGCCAATAAATCCCTGATAGTCGATAGCTTTGCTCTATAGCCTTTTTGAATTACAGCGTTTCAGTTAAAATGAAAGCCAG
TTTACACAAAGGACTGCGTA

Downstream 100 bases:

>100_bases
GCGACGTTTGGCAACAGCAACGTCAGCGCATGGTTGACGAACAACTTCGCCCACGAGGCATTCATGATCAGCGGATTTTG
GCGGCAATGGCCAATGTGCC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTKVKKHRLDVLLVELQLAPTRAKAQALIMAGEVIVNSQAETKAGTMIDPAAQITLKSSLPYVGRGGLKLAHALDSFNIN
PQGCVALDVGACTGGFSDVLLQRDAAHVYAIDVGYGQLDWKIRQDPRVTVLERTNIRYLEHLPHAEQQPAPLATCGVVDV
SFISLGLVLPAMLRLLTADAWIVCLIKPQFEAGPEHVGKGGIVRDSAVHRQVIERVAQQANNLGLGLTGLTRSPITGAEG
NIEFLGYFQRNAVATIALPQALIGLGL

Sequences:

>Translated_267_residues
MTKVKKHRLDVLLVELQLAPTRAKAQALIMAGEVIVNSQAETKAGTMIDPAAQITLKSSLPYVGRGGLKLAHALDSFNIN
PQGCVALDVGACTGGFSDVLLQRDAAHVYAIDVGYGQLDWKIRQDPRVTVLERTNIRYLEHLPHAEQQPAPLATCGVVDV
SFISLGLVLPAMLRLLTADAWIVCLIKPQFEAGPEHVGKGGIVRDSAVHRQVIERVAQQANNLGLGLTGLTRSPITGAEG
NIEFLGYFQRNAVATIALPQALIGLGL
>Mature_266_residues
TKVKKHRLDVLLVELQLAPTRAKAQALIMAGEVIVNSQAETKAGTMIDPAAQITLKSSLPYVGRGGLKLAHALDSFNINP
QGCVALDVGACTGGFSDVLLQRDAAHVYAIDVGYGQLDWKIRQDPRVTVLERTNIRYLEHLPHAEQQPAPLATCGVVDVS
FISLGLVLPAMLRLLTADAWIVCLIKPQFEAGPEHVGKGGIVRDSAVHRQVIERVAQQANNLGLGLTGLTRSPITGAEGN
IEFLGYFQRNAVATIALPQALIGLGL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28575; Mature: 28443

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVKKHRLDVLLVELQLAPTRAKAQALIMAGEVIVNSQAETKAGTMIDPAAQITLKSSL
CCCCHHHCEEEEEEEEEECCCHHHHEEEEEECEEEECCCCCCCCCCEECCCCEEEEECCC
PYVGRGGLKLAHALDSFNINPQGCVALDVGACTGGFSDVLLQRDAAHVYAIDVGYGQLDW
CCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEE
KIRQDPRVTVLERTNIRYLEHLPHAEQQPAPLATCGVVDVSFISLGLVLPAMLRLLTADA
EECCCCCEEEEECCCCHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCE
WIVCLIKPQFEAGPEHVGKGGIVRDSAVHRQVIERVAQQANNLGLGLTGLTRSPITGAEG
EEEEEECCCCCCCCHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
NIEFLGYFQRNAVATIALPQALIGLGL
CEEEEEEECCCEEEEEEHHHHHHHCCC
>Mature Secondary Structure 
TKVKKHRLDVLLVELQLAPTRAKAQALIMAGEVIVNSQAETKAGTMIDPAAQITLKSSL
CCCHHHCEEEEEEEEEECCCHHHHEEEEEECEEEECCCCCCCCCCEECCCCEEEEECCC
PYVGRGGLKLAHALDSFNINPQGCVALDVGACTGGFSDVLLQRDAAHVYAIDVGYGQLDW
CCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEE
KIRQDPRVTVLERTNIRYLEHLPHAEQQPAPLATCGVVDVSFISLGLVLPAMLRLLTADA
EECCCCCEEEEECCCCHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCE
WIVCLIKPQFEAGPEHVGKGGIVRDSAVHRQVIERVAQQANNLGLGLTGLTRSPITGAEG
EEEEEECCCCCCCCHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
NIEFLGYFQRNAVATIALPQALIGLGL
CEEEEEEECCCEEEEEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]