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The map label for this gene is ocd [H]

Identifier: 159898388

GI number: 159898388

Start: 2197927

End: 2198925

Strand: Direct

Name: ocd [H]

Synonym: Haur_1864

Alternate gene names: 159898388

Gene position: 2197927-2198925 (Clockwise)

Preceding gene: 159898387

Following gene: 159898389

Centisome position: 34.63

GC content: 52.45

Gene sequence:

>999_bases
ATGCAACAATCATTAACCCTACTCAAAGGCCATGAAGTTGGGCGCATTCTCGATGGAGCCGAATTAACCTTGATCGATTT
GGTGCGAGTGGCTTACGAGGCGCATCAGGCTGGATTAAGCTCCCTGCCGCATTCCAGCTTTTTGCGCTTCCCAAATGATC
CATTAAATCGGATTATTGCCTTGCCAGCCTACTTAGGTGGTGCGCAGCCGAGTGCTGGAATTAAGTGGATCGCCTCGTTT
CCTGGCAACCTGAGCCATGGTATCCAACGCGCCAACGCCACAATTACCCTCAACGATCCGCAAACCGGCTTGCCCATTGC
CTTTATGGAAGGTGCGCAAATTAGTGCCAAACGCACGGCGGCCAGTGCAGCCTTAGCGGCCAAATATTTGCATTCCAACC
CACAGGAGACGCGGGTTGGCTTGGTTGGCTGTGGCGTGATCAACCATGAAACCCTGCGCTTTTTGCTGGCAGTCTTTCCG
AGCATTCGTGAGGTGCTGGTGTTTGATACCCAACCAGCCCATGCCGAGCATTTTCAGGCAGCATGTAGCGATCAGTTTGG
GATGAATGTGCAAGTTGTGGCTTCAATCGAGGCCTTGCTTCAGCGCACCAGCTTGATCGCTTTGGCAACGACGGCAATTA
CGCCCCATATTGATGATTTGAGCATGTGCGCTGCTGGCACAACCATTTTGCATACATCGCTGCGCGATCTCAACCCTCGC
TTAATTGAGTTTTGCGATAACGTCGTTGATGATCGTGAGCATGTCTTGCGAGCGAATACCTCGCTTGATTTGGCTCAACA
AGCCTTGGGGCATCACCATTTTGTGCGTTGCAATCTCGCCGAAATTACCAGCGGCCAAGTTCCTGCTCGCCCCAACCCTG
AGCAAACCACGATCTTTAGCCCATTTGGCTTGGGCGTGCTCGATTTAGCCTTGGCCCAGTGGGTTTTGGGCCAAGCCCGC
GAATATACGATTGGCCTAACCCTCAACGATTTCTGCTAA

Upstream 100 bases:

>100_bases
TCAACATCTCCCAAGTGTCCTGATTAATCAATCGCAACCACTGATCGAACGCGAAAATGTTGTCGGCTAAACTGCCGCTG
TGAGGAATACGAGGAATACA

Downstream 100 bases:

>100_bases
GCAACCCACCTCGTAAGATCGCCAAGCCACTCATTGATTAAGTGGCTTGGCGAATGTTGATTCATGCTTCAAGCACAACC
CCTAGTGCCAGCAATGTATT

Product: ornithine cyclodeaminase/mu-crystallin

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MQQSLTLLKGHEVGRILDGAELTLIDLVRVAYEAHQAGLSSLPHSSFLRFPNDPLNRIIALPAYLGGAQPSAGIKWIASF
PGNLSHGIQRANATITLNDPQTGLPIAFMEGAQISAKRTAASAALAAKYLHSNPQETRVGLVGCGVINHETLRFLLAVFP
SIREVLVFDTQPAHAEHFQAACSDQFGMNVQVVASIEALLQRTSLIALATTAITPHIDDLSMCAAGTTILHTSLRDLNPR
LIEFCDNVVDDREHVLRANTSLDLAQQALGHHHFVRCNLAEITSGQVPARPNPEQTTIFSPFGLGVLDLALAQWVLGQAR
EYTIGLTLNDFC

Sequences:

>Translated_332_residues
MQQSLTLLKGHEVGRILDGAELTLIDLVRVAYEAHQAGLSSLPHSSFLRFPNDPLNRIIALPAYLGGAQPSAGIKWIASF
PGNLSHGIQRANATITLNDPQTGLPIAFMEGAQISAKRTAASAALAAKYLHSNPQETRVGLVGCGVINHETLRFLLAVFP
SIREVLVFDTQPAHAEHFQAACSDQFGMNVQVVASIEALLQRTSLIALATTAITPHIDDLSMCAAGTTILHTSLRDLNPR
LIEFCDNVVDDREHVLRANTSLDLAQQALGHHHFVRCNLAEITSGQVPARPNPEQTTIFSPFGLGVLDLALAQWVLGQAR
EYTIGLTLNDFC
>Mature_332_residues
MQQSLTLLKGHEVGRILDGAELTLIDLVRVAYEAHQAGLSSLPHSSFLRFPNDPLNRIIALPAYLGGAQPSAGIKWIASF
PGNLSHGIQRANATITLNDPQTGLPIAFMEGAQISAKRTAASAALAAKYLHSNPQETRVGLVGCGVINHETLRFLLAVFP
SIREVLVFDTQPAHAEHFQAACSDQFGMNVQVVASIEALLQRTSLIALATTAITPHIDDLSMCAAGTTILHTSLRDLNPR
LIEFCDNVVDDREHVLRANTSLDLAQQALGHHHFVRCNLAEITSGQVPARPNPEQTTIFSPFGLGVLDLALAQWVLGQAR
EYTIGLTLNDFC

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35855; Mature: 35855

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQSLTLLKGHEVGRILDGAELTLIDLVRVAYEAHQAGLSSLPHSSFLRFPNDPLNRIIA
CCCCCCHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHEE
LPAYLGGAQPSAGIKWIASFPGNLSHGIQRANATITLNDPQTGLPIAFMEGAQISAKRTA
HHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCEEEECCCCCCCCEEEECCCCCCHHHHH
ASAALAAKYLHSNPQETRVGLVGCGVINHETLRFLLAVFPSIREVLVFDTQPAHAEHFQA
HHHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHH
ACSDQFGMNVQVVASIEALLQRTSLIALATTAITPHIDDLSMCAAGTTILHTSLRDLNPR
HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHCCHH
LIEFCDNVVDDREHVLRANTSLDLAQQALGHHHFVRCNLAEITSGQVPARPNPEQTTIFS
HHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCEEEEC
PFGLGVLDLALAQWVLGQAREYTIGLTLNDFC
CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC
>Mature Secondary Structure
MQQSLTLLKGHEVGRILDGAELTLIDLVRVAYEAHQAGLSSLPHSSFLRFPNDPLNRIIA
CCCCCCHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHEE
LPAYLGGAQPSAGIKWIASFPGNLSHGIQRANATITLNDPQTGLPIAFMEGAQISAKRTA
HHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCEEEECCCCCCCCEEEECCCCCCHHHHH
ASAALAAKYLHSNPQETRVGLVGCGVINHETLRFLLAVFPSIREVLVFDTQPAHAEHFQA
HHHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHH
ACSDQFGMNVQVVASIEALLQRTSLIALATTAITPHIDDLSMCAAGTTILHTSLRDLNPR
HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHCCHH
LIEFCDNVVDDREHVLRANTSLDLAQQALGHHHFVRCNLAEITSGQVPARPNPEQTTIFS
HHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCEEEEC
PFGLGVLDLALAQWVLGQAREYTIGLTLNDFC
CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7873778 [H]