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The map label for this gene is ybbK [C]

Identifier: 159898003

GI number: 159898003

Start: 1727142

End: 1728014

Strand: Direct

Name: ybbK [C]

Synonym: Haur_1478

Alternate gene names: 159898003

Gene position: 1727142-1728014 (Clockwise)

Preceding gene: 159898002

Following gene: 159898005

Centisome position: 27.21

GC content: 47.54

Gene sequence:

>873_bases
ATGGGTGAGTTTGGCGGAATTGCCTTAATTTTCATTGCGGTGATCTTATTTTTCTTTTTGATCTCGGCAATCAAAATTAT
CCCAGAATATGAAAAAGGCGTGATTTTTCGCTTAGGACGGTTGGTTGGCGTGCGCGGGCCTGGCTTATTCTTTGTGATTC
CCATGCTTGAGCGTATGTTTCGGATCGACACCCGCGTGATTACGATGGACGTGCCAGCCCAAGAAGTTATTACCCGTGAT
AATGTGACCATTCGGGTGAATGCGGTGTTGTACTTCTTGGTGATTGATCCAGGCAAGGCGGTAGTGAATGTGATGGATTA
CATTCGCGCAACCATGCAAATTGCCCAAACGACCCTGCGTTCAGTTGTTGGTCAGTTTGAGCTTGATGAAATGCTTTCGC
AACGTGAGCAAATCAACCATCGTTTGCAGCAAATTATCGACGAACAAACTGAGCCTTGGGGCATCAAAGTTAATATCGTT
GAAATTAAAGACGTTGAATTGCCTCAATCAATGCAACGGGCGATGGCAAAACAAGCCGAAGCCGAGCGCGAAAAACGCGC
CAAGATCATTCACGCCGACGGTGAATTCCAAGCTTCCAAGCGTTTGGCTGAAGCTGCCGATGTGATTTCACGCGAGCCAG
TGACTTTGCAATTGCGCTATTTGCAAACCTTGACCGAAATCGCGGTCGAAAAGAATTCGACCTTGGTCTTCCCATTGCCA
ATTGACTTAATTCGCCCATTTATTGATCGGGCCTACAGTGGTGTTCAGAATGATCACTATTCTGAAGGTGGTAAAAAGCC
AAACGAACCCCGCACGGCTGCTGAGCCACGCCGTGGCTTGTTCGACCCAATGACCGGTTTACCGCTCGAATAA

Upstream 100 bases:

>100_bases
GACCGTAGGCGATCAGGCTGAAATTGTTGGTTTAGATGGTTTAACCTTGATTGTGCGTCGAGTGGCGCATAGTGGGCGCT
AATGCGCGGAGGTGATTACA

Downstream 100 bases:

>100_bases
ATTTGACATAGTGCAGAAAACCCTGATCCTAATTGCTTTAGGATCAGGGTTTTCTGTTTAAATTGCTGCGGTCGAATCGC
GGACTACCAACTCGACTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MGEFGGIALIFIAVILFFFLISAIKIIPEYEKGVIFRLGRLVGVRGPGLFFVIPMLERMFRIDTRVITMDVPAQEVITRD
NVTIRVNAVLYFLVIDPGKAVVNVMDYIRATMQIAQTTLRSVVGQFELDEMLSQREQINHRLQQIIDEQTEPWGIKVNIV
EIKDVELPQSMQRAMAKQAEAEREKRAKIIHADGEFQASKRLAEAADVISREPVTLQLRYLQTLTEIAVEKNSTLVFPLP
IDLIRPFIDRAYSGVQNDHYSEGGKKPNEPRTAAEPRRGLFDPMTGLPLE

Sequences:

>Translated_290_residues
MGEFGGIALIFIAVILFFFLISAIKIIPEYEKGVIFRLGRLVGVRGPGLFFVIPMLERMFRIDTRVITMDVPAQEVITRD
NVTIRVNAVLYFLVIDPGKAVVNVMDYIRATMQIAQTTLRSVVGQFELDEMLSQREQINHRLQQIIDEQTEPWGIKVNIV
EIKDVELPQSMQRAMAKQAEAEREKRAKIIHADGEFQASKRLAEAADVISREPVTLQLRYLQTLTEIAVEKNSTLVFPLP
IDLIRPFIDRAYSGVQNDHYSEGGKKPNEPRTAAEPRRGLFDPMTGLPLE
>Mature_289_residues
GEFGGIALIFIAVILFFFLISAIKIIPEYEKGVIFRLGRLVGVRGPGLFFVIPMLERMFRIDTRVITMDVPAQEVITRDN
VTIRVNAVLYFLVIDPGKAVVNVMDYIRATMQIAQTTLRSVVGQFELDEMLSQREQINHRLQQIIDEQTEPWGIKVNIVE
IKDVELPQSMQRAMAKQAEAEREKRAKIIHADGEFQASKRLAEAADVISREPVTLQLRYLQTLTEIAVEKNSTLVFPLPI
DLIRPFIDRAYSGVQNDHYSEGGKKPNEPRTAAEPRRGLFDPMTGLPLE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=259, Percent_Identity=49.8069498069498, Blast_Score=232, Evalue=3e-61,
Organism=Homo sapiens, GI221316744, Length=275, Percent_Identity=44.7272727272727, Blast_Score=221, Evalue=7e-58,
Organism=Homo sapiens, GI21686995, Length=275, Percent_Identity=44.7272727272727, Blast_Score=221, Evalue=7e-58,
Organism=Homo sapiens, GI7657615, Length=240, Percent_Identity=37.0833333333333, Blast_Score=169, Evalue=3e-42,
Organism=Homo sapiens, GI7305503, Length=180, Percent_Identity=36.6666666666667, Blast_Score=131, Evalue=8e-31,
Organism=Homo sapiens, GI20149563, Length=161, Percent_Identity=31.055900621118, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI38016907, Length=66, Percent_Identity=59.0909090909091, Blast_Score=81, Evalue=1e-15,
Organism=Escherichia coli, GI1786697, Length=194, Percent_Identity=41.7525773195876, Blast_Score=154, Evalue=7e-39,
Organism=Caenorhabditis elegans, GI71987612, Length=266, Percent_Identity=51.1278195488722, Blast_Score=246, Evalue=8e-66,
Organism=Caenorhabditis elegans, GI25153583, Length=258, Percent_Identity=51.937984496124, Blast_Score=244, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI71987621, Length=266, Percent_Identity=51.1278195488722, Blast_Score=244, Evalue=4e-65,
Organism=Caenorhabditis elegans, GI17569499, Length=250, Percent_Identity=52, Blast_Score=234, Evalue=4e-62,
Organism=Caenorhabditis elegans, GI17569493, Length=245, Percent_Identity=49.3877551020408, Blast_Score=229, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI193209764, Length=245, Percent_Identity=49.3877551020408, Blast_Score=228, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17570459, Length=230, Percent_Identity=50.8695652173913, Blast_Score=224, Evalue=5e-59,
Organism=Caenorhabditis elegans, GI17570161, Length=247, Percent_Identity=49.7975708502024, Blast_Score=221, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI193210507, Length=247, Percent_Identity=49.7975708502024, Blast_Score=221, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI71989948, Length=240, Percent_Identity=48.3333333333333, Blast_Score=213, Evalue=8e-56,
Organism=Caenorhabditis elegans, GI17569497, Length=248, Percent_Identity=44.3548387096774, Blast_Score=204, Evalue=5e-53,
Organism=Caenorhabditis elegans, GI32566490, Length=228, Percent_Identity=48.2456140350877, Blast_Score=195, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI71989955, Length=188, Percent_Identity=50, Blast_Score=164, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI32564147, Length=187, Percent_Identity=38.5026737967914, Blast_Score=130, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI71989963, Length=123, Percent_Identity=49.5934959349593, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17542664, Length=163, Percent_Identity=26.9938650306748, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI45556022, Length=251, Percent_Identity=49.800796812749, Blast_Score=242, Evalue=2e-64,
Organism=Drosophila melanogaster, GI18860517, Length=243, Percent_Identity=50.6172839506173, Blast_Score=236, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24657857, Length=260, Percent_Identity=50, Blast_Score=224, Evalue=7e-59,
Organism=Drosophila melanogaster, GI281365664, Length=260, Percent_Identity=50, Blast_Score=223, Evalue=9e-59,
Organism=Drosophila melanogaster, GI62484448, Length=260, Percent_Identity=50, Blast_Score=223, Evalue=1e-58,
Organism=Drosophila melanogaster, GI62484274, Length=272, Percent_Identity=48.5294117647059, Blast_Score=222, Evalue=3e-58,
Organism=Drosophila melanogaster, GI281361633, Length=244, Percent_Identity=42.2131147540984, Blast_Score=219, Evalue=2e-57,
Organism=Drosophila melanogaster, GI281361631, Length=244, Percent_Identity=42.2131147540984, Blast_Score=218, Evalue=3e-57,
Organism=Drosophila melanogaster, GI21356845, Length=243, Percent_Identity=41.1522633744856, Blast_Score=212, Evalue=2e-55,
Organism=Drosophila melanogaster, GI28573263, Length=241, Percent_Identity=40.6639004149378, Blast_Score=200, Evalue=1e-51,
Organism=Drosophila melanogaster, GI281361635, Length=184, Percent_Identity=43.4782608695652, Blast_Score=165, Evalue=3e-41,
Organism=Drosophila melanogaster, GI45550506, Length=184, Percent_Identity=37.5, Blast_Score=131, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 32907; Mature: 32776

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEFGGIALIFIAVILFFFLISAIKIIPEYEKGVIFRLGRLVGVRGPGLFFVIPMLERMF
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RIDTRVITMDVPAQEVITRDNVTIRVNAVLYFLVIDPGKAVVNVMDYIRATMQIAQTTLR
HHCCEEEEECCCHHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
SVVGQFELDEMLSQREQINHRLQQIIDEQTEPWGIKVNIVEIKDVELPQSMQRAMAKQAE
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
AEREKRAKIIHADGEFQASKRLAEAADVISREPVTLQLRYLQTLTEIAVEKNSTLVFPLP
HHHHHHCEEEECCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCEEEEECC
IDLIRPFIDRAYSGVQNDHYSEGGKKPNEPRTAAEPRRGLFDPMTGLPLE
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GEFGGIALIFIAVILFFFLISAIKIIPEYEKGVIFRLGRLVGVRGPGLFFVIPMLERMF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RIDTRVITMDVPAQEVITRDNVTIRVNAVLYFLVIDPGKAVVNVMDYIRATMQIAQTTLR
HHCCEEEEECCCHHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
SVVGQFELDEMLSQREQINHRLQQIIDEQTEPWGIKVNIVEIKDVELPQSMQRAMAKQAE
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
AEREKRAKIIHADGEFQASKRLAEAADVISREPVTLQLRYLQTLTEIAVEKNSTLVFPLP
HHHHHHCEEEECCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCEEEEECC
IDLIRPFIDRAYSGVQNDHYSEGGKKPNEPRTAAEPRRGLFDPMTGLPLE
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]