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The map label for this gene is rpfG [H]

Identifier: 159897999

GI number: 159897999

Start: 1722775

End: 1723812

Strand: Direct

Name: rpfG [H]

Synonym: Haur_1474

Alternate gene names: 159897999

Gene position: 1722775-1723812 (Clockwise)

Preceding gene: 159897998

Following gene: 159898002

Centisome position: 27.14

GC content: 49.52

Gene sequence:

>1038_bases
GTGAATAATCCTGCAACAATCCTCATCATTGACGATCTCGCAGTTGCACGCGCTAGTATGAATGCTGTGCTTCAAGGTGA
GGGTTATCACTTAGTTTTTGCTGAAAATGGCCTATCGGGGATTGCCCAAGCCCTCGAATTATTGCCAGATACTATTTTGC
TTGACGTAATGATGCCGGATATGGATGGATTTGAAGTTTGCCGCCAAATTCGGGCTAACCCATTGCTCGCCGAAATTCCG
GTGGTTATGGTGACCGCCTTGGATGATCGTGAATCGCGTTTGCAAGGCTTACGCGCTGGAGCCGACGATTTTCTGAGCAA
ACCAATTGATAGCCTTGAACTAAAAACCCGTTTGCAAACGATTACGCGTTTGAATCGTTATCGACGTTTGCAAGATGAGC
GCCGCCAAGTCGAGCGGCTGAATCAAGAAATTATCGATGCCTATAATGCGGGCATTGAGGCTTGGTCGCGGGCTTTAGAT
TTGCGTGATAAAGAAACCGAGGGCCATAGCAAGCGCGTGACTGAAATGACGGTGCGCATTGCTGAGGCCTTGGGAATTAC
TGGCGACGATCTGACCCAAATTTGGCGTGGGGCGTTGCTACACGACATCGGTAAAATGGGTATTCCCGATGCGATTTTAC
ATAAGCCTGGCCCATTGACTGCCGAAGAGTGGGTTATTATGCAAAAACACCCAACCTATGCCTATGAGCTGTTGCGGCCA
ATCCATTATTTAGAGCCAGCCTTAGATATTCCCTATTGTCACCACGAAAAATGGGATGGTAGCGGCTACCCGCGTGGGTT
GCAAGGTGAGGAAATTCCTTTAGCGGCGCGAATTTTTGCCTTGGCTGATGTGTGGGATGCTTTGCGGTCCGACCGACCAT
ACCGTGCAGGCTGGCCGGTCGAACAAATTCGTGAACATATTGCTGGTTTGGCGGGCAGCCATTTTGACCCAGCCTTAGTG
CCACTGTTTCTACAATTAGTTGAAGAAGCTCCACAGCCCGTATTATTGCAACACTATGCCCCAGCTACGCTTCGCTAG

Upstream 100 bases:

>100_bases
CTTGCCGAGCAAGCCGATACAGTTTTATATAAACCACTTAATTTAGTTGAACTTGAACAATTAATTAATACCTTGTGCAA
CCAACAAAGGAGTCTTGATC

Downstream 100 bases:

>100_bases
GTTGGGGCTTGTGAGCTTCGTACTCGCGGTGGGCCAACTCGGAAATGAGCATATAGCGCTGAATAATGCTGGCAATCGGG
GCAAGCACAGCAATTCGGCG

Product: response regulator receiver modulated metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNNPATILIIDDLAVARASMNAVLQGEGYHLVFAENGLSGIAQALELLPDTILLDVMMPDMDGFEVCRQIRANPLLAEIP
VVMVTALDDRESRLQGLRAGADDFLSKPIDSLELKTRLQTITRLNRYRRLQDERRQVERLNQEIIDAYNAGIEAWSRALD
LRDKETEGHSKRVTEMTVRIAEALGITGDDLTQIWRGALLHDIGKMGIPDAILHKPGPLTAEEWVIMQKHPTYAYELLRP
IHYLEPALDIPYCHHEKWDGSGYPRGLQGEEIPLAARIFALADVWDALRSDRPYRAGWPVEQIREHIAGLAGSHFDPALV
PLFLQLVEEAPQPVLLQHYAPATLR

Sequences:

>Translated_345_residues
MNNPATILIIDDLAVARASMNAVLQGEGYHLVFAENGLSGIAQALELLPDTILLDVMMPDMDGFEVCRQIRANPLLAEIP
VVMVTALDDRESRLQGLRAGADDFLSKPIDSLELKTRLQTITRLNRYRRLQDERRQVERLNQEIIDAYNAGIEAWSRALD
LRDKETEGHSKRVTEMTVRIAEALGITGDDLTQIWRGALLHDIGKMGIPDAILHKPGPLTAEEWVIMQKHPTYAYELLRP
IHYLEPALDIPYCHHEKWDGSGYPRGLQGEEIPLAARIFALADVWDALRSDRPYRAGWPVEQIREHIAGLAGSHFDPALV
PLFLQLVEEAPQPVLLQHYAPATLR
>Mature_345_residues
MNNPATILIIDDLAVARASMNAVLQGEGYHLVFAENGLSGIAQALELLPDTILLDVMMPDMDGFEVCRQIRANPLLAEIP
VVMVTALDDRESRLQGLRAGADDFLSKPIDSLELKTRLQTITRLNRYRRLQDERRQVERLNQEIIDAYNAGIEAWSRALD
LRDKETEGHSKRVTEMTVRIAEALGITGDDLTQIWRGALLHDIGKMGIPDAILHKPGPLTAEEWVIMQKHPTYAYELLRP
IHYLEPALDIPYCHHEKWDGSGYPRGLQGEEIPLAARIFALADVWDALRSDRPYRAGWPVEQIREHIAGLAGSHFDPALV
PLFLQLVEEAPQPVLLQHYAPATLR

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=117, Percent_Identity=37.6068376068376, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790860, Length=118, Percent_Identity=36.4406779661017, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788550, Length=145, Percent_Identity=28.9655172413793, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786911, Length=119, Percent_Identity=34.453781512605, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788394, Length=128, Percent_Identity=35.15625, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786784, Length=117, Percent_Identity=35.042735042735, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790437, Length=114, Percent_Identity=35.9649122807018, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787375, Length=119, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787229, Length=119, Percent_Identity=31.0924369747899, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790863, Length=133, Percent_Identity=27.8195488721804, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789809, Length=129, Percent_Identity=32.5581395348837, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789402, Length=118, Percent_Identity=33.8983050847458, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 38814; Mature: 38814

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNPATILIIDDLAVARASMNAVLQGEGYHLVFAENGLSGIAQALELLPDTILLDVMMPD
CCCCEEEEEECCHHHHHHHHHHEEECCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHCCC
MDGFEVCRQIRANPLLAEIPVVMVTALDDRESRLQGLRAGADDFLSKPIDSLELKTRLQT
CCHHHHHHHHHCCCCHHHCCEEEEEECCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHH
ITRLNRYRRLQDERRQVERLNQEIIDAYNAGIEAWSRALDLRDKETEGHSKRVTEMTVRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AEALGITGDDLTQIWRGALLHDIGKMGIPDAILHKPGPLTAEEWVIMQKHPTYAYELLRP
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHEEEEECCCHHHHHHHHH
IHYLEPALDIPYCHHEKWDGSGYPRGLQGEEIPLAARIFALADVWDALRSDRPYRAGWPV
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
EQIREHIAGLAGSHFDPALVPLFLQLVEEAPQPVLLQHYAPATLR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCCCCC
>Mature Secondary Structure
MNNPATILIIDDLAVARASMNAVLQGEGYHLVFAENGLSGIAQALELLPDTILLDVMMPD
CCCCEEEEEECCHHHHHHHHHHEEECCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHCCC
MDGFEVCRQIRANPLLAEIPVVMVTALDDRESRLQGLRAGADDFLSKPIDSLELKTRLQT
CCHHHHHHHHHCCCCHHHCCEEEEEECCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHH
ITRLNRYRRLQDERRQVERLNQEIIDAYNAGIEAWSRALDLRDKETEGHSKRVTEMTVRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AEALGITGDDLTQIWRGALLHDIGKMGIPDAILHKPGPLTAEEWVIMQKHPTYAYELLRP
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHEEEEECCCHHHHHHHHH
IHYLEPALDIPYCHHEKWDGSGYPRGLQGEEIPLAARIFALADVWDALRSDRPYRAGWPV
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
EQIREHIAGLAGSHFDPALVPLFLQLVEEAPQPVLLQHYAPATLR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]