Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

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The map label for this gene is ucpA [C]

Identifier: 159897945

GI number: 159897945

Start: 1639037

End: 1639879

Strand: Reverse

Name: ucpA [C]

Synonym: Haur_1420

Alternate gene names: 159897945

Gene position: 1639879-1639037 (Counterclockwise)

Preceding gene: 159897946

Following gene: 159897944

Centisome position: 25.84

GC content: 53.26

Gene sequence:

>843_bases
GTGCGTCTCCTAAATAAACATGTGATCATCACTGGTGGCTCCAGCGGCATTGGCTTTGCCACAGCCCAGCGCATTTTGGC
CCGCGGAGCCTCGGTTTCGTTGATCGCTCGCAATCGGATTCGGTTGGTCGAGGCTGCCGAACGCTTGCAACCCTTGATCA
ATCGGGCGGGGCAGCGGATCGAAATTGCCACCGCCGATGTGCGAGTTCGCCATGATGTCAGTCAAGCCATCGCCGATCTG
ATTCAACGGGCTGGCCCATGTGATGTGTTGATCGCTGCCGCTGGTGGCGTTCAAGCTGGGCCATTTCAACAACTTGATGA
TCAGGTTTTTCGTGATCTGATGGATTTGAATTATTTTGGTACGCTGCATGCGATTCGTGCGGTTGTGCCCCATATGCAAA
ATCGCCGCGTTGGCTCGATTGTCGCGATTTCATCGGTAGCAGGTTTAGGCGGGACATTTGGCTATAGTGCCTACACTCCC
ACCAAATTCGCGATTCGCGGGCTGATGGAAGTCTTGCGTCCAGAACTAAAAGCTTATAACATCACGACGAGCGTGGTGTA
TCCAAGCGATATTCAAACCGAGGTTGGGCAAGCCAGCAGTAATGGCGATAGCAGCCTGAGCAATCAGCAACCAATTAATG
CCGACCGAATTGCCCAAGCGATTGTCCGTGGCATTCTCAAACGCCGCTTTATCATCACCGCCGATGCCCAAAGCTCATGG
TTGGTGCGGGTTGGCAACTTGGCCGCGCCAATCTTAAACAGGTTCTTTGATCGTCCTGTGAAGCGTTCACAACAGCAACC
AAAGCCCCACGAGGATAACACCCCACCAACAGGCTTGGTTTAA

Upstream 100 bases:

>100_bases
TTGCGGCGCATACTGGCGATTTACCAGCCTTCGATGACCTTACTTTAGTGGTGATTAAACGGCTGGCCGATGCCAATCAA
CCTGTTTGAGGAATTTGATC

Downstream 100 bases:

>100_bases
GGAGAGCATTATGCAATCGTGGTCGGATGATATTCAGCAACAAGCCGCCGTGTTTAACGCGATTGGGGCCGATTATGAGG
TGATGTTTGGCAATAATCAA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MRLLNKHVIITGGSSGIGFATAQRILARGASVSLIARNRIRLVEAAERLQPLINRAGQRIEIATADVRVRHDVSQAIADL
IQRAGPCDVLIAAAGGVQAGPFQQLDDQVFRDLMDLNYFGTLHAIRAVVPHMQNRRVGSIVAISSVAGLGGTFGYSAYTP
TKFAIRGLMEVLRPELKAYNITTSVVYPSDIQTEVGQASSNGDSSLSNQQPINADRIAQAIVRGILKRRFIITADAQSSW
LVRVGNLAAPILNRFFDRPVKRSQQQPKPHEDNTPPTGLV

Sequences:

>Translated_280_residues
MRLLNKHVIITGGSSGIGFATAQRILARGASVSLIARNRIRLVEAAERLQPLINRAGQRIEIATADVRVRHDVSQAIADL
IQRAGPCDVLIAAAGGVQAGPFQQLDDQVFRDLMDLNYFGTLHAIRAVVPHMQNRRVGSIVAISSVAGLGGTFGYSAYTP
TKFAIRGLMEVLRPELKAYNITTSVVYPSDIQTEVGQASSNGDSSLSNQQPINADRIAQAIVRGILKRRFIITADAQSSW
LVRVGNLAAPILNRFFDRPVKRSQQQPKPHEDNTPPTGLV
>Mature_280_residues
MRLLNKHVIITGGSSGIGFATAQRILARGASVSLIARNRIRLVEAAERLQPLINRAGQRIEIATADVRVRHDVSQAIADL
IQRAGPCDVLIAAAGGVQAGPFQQLDDQVFRDLMDLNYFGTLHAIRAVVPHMQNRRVGSIVAISSVAGLGGTFGYSAYTP
TKFAIRGLMEVLRPELKAYNITTSVVYPSDIQTEVGQASSNGDSSLSNQQPINADRIAQAIVRGILKRRFIITADAQSSW
LVRVGNLAAPILNRFFDRPVKRSQQQPKPHEDNTPPTGLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=231, Percent_Identity=36.3636363636364, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=35.7894736842105, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI20149619, Length=278, Percent_Identity=28.7769784172662, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI157739938, Length=207, Percent_Identity=28.5024154589372, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=30.4568527918782, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI32483357, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI40807363, Length=230, Percent_Identity=29.1304347826087, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI5031737, Length=209, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=28.2051282051282, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI223718074, Length=190, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4758504, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI83715985, Length=174, Percent_Identity=32.183908045977, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723750, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI150247226, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1790717, Length=196, Percent_Identity=28.0612244897959, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=29.7619047619048, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787820, Length=198, Percent_Identity=28.2828282828283, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787335, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787526, Length=179, Percent_Identity=30.7262569832402, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786701, Length=263, Percent_Identity=25.8555133079848, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=185, Percent_Identity=32.972972972973, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=198, Percent_Identity=30.8080808080808, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=192, Percent_Identity=32.8125, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=224, Percent_Identity=29.0178571428571, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=241, Percent_Identity=25.7261410788382, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=213, Percent_Identity=28.6384976525822, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=233, Percent_Identity=26.1802575107296, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=258, Percent_Identity=28.6821705426357, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=30.1587301587302, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6319742, Length=259, Percent_Identity=27.4131274131274, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21356301, Length=246, Percent_Identity=30.0813008130081, Blast_Score=124, Evalue=6e-29,
Organism=Drosophila melanogaster, GI281364892, Length=174, Percent_Identity=35.0574712643678, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24581726, Length=161, Percent_Identity=33.5403726708075, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21355631, Length=268, Percent_Identity=25.3731343283582, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28571387, Length=233, Percent_Identity=28.3261802575107, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21358495, Length=244, Percent_Identity=27.8688524590164, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24641388, Length=206, Percent_Identity=30.5825242718447, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640492, Length=192, Percent_Identity=28.125, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI21355319, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24663911, Length=216, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648693, Length=208, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355889, Length=208, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=27.5132275132275, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=27.7486910994764, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007234, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737361, Length=202, Percent_Identity=28.7128712871287, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=226, Percent_Identity=28.3185840707965, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007238, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24580925, Length=230, Percent_Identity=30, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24643142, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28571526, Length=191, Percent_Identity=27.2251308900524, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI116007232, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30377; Mature: 30377

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MRLLNKHVIITGGSSGIGFATAQRILARGASVSLIARNRIRLVEAAERLQPLINRAGQRI
CCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCEE
EIATADVRVRHDVSQAIADLIQRAGPCDVLIAAAGGVQAGPFQQLDDQVFRDLMDLNYFG
EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
TLHAIRAVVPHMQNRRVGSIVAISSVAGLGGTFGYSAYTPTKFAIRGLMEVLRPELKAYN
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEE
ITTSVVYPSDIQTEVGQASSNGDSSLSNQQPINADRIAQAIVRGILKRRFIITADAQSSW
EEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCE
LVRVGNLAAPILNRFFDRPVKRSQQQPKPHEDNTPPTGLV
EEEHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLNKHVIITGGSSGIGFATAQRILARGASVSLIARNRIRLVEAAERLQPLINRAGQRI
CCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCEE
EIATADVRVRHDVSQAIADLIQRAGPCDVLIAAAGGVQAGPFQQLDDQVFRDLMDLNYFG
EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
TLHAIRAVVPHMQNRRVGSIVAISSVAGLGGTFGYSAYTPTKFAIRGLMEVLRPELKAYN
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEE
ITTSVVYPSDIQTEVGQASSNGDSSLSNQQPINADRIAQAIVRGILKRRFIITADAQSSW
EEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCE
LVRVGNLAAPILNRFFDRPVKRSQQQPKPHEDNTPPTGLV
EEEHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1905979; 11679669 [H]