Click here to switch to the map view.

The map label for this gene is 159897925

Identifier: 159897925

GI number: 159897925

Start: 1616106

End: 1616528

Strand: Reverse

Name: 159897925

Synonym: Haur_1399

Alternate gene names: NA

Gene position: 1616528-1616106 (Counterclockwise)

Preceding gene: 159897934

Following gene: 159897924

Centisome position: 25.47

GC content: 37.83

Gene sequence:

>423_bases
ATGCCTTATACTAAGTATTATCGGCTTGTCCACGAGGTCAGAATGACAGAATTATCCATTTTTCTTAAAAAGCAGATGAA
GGATAACGAGTGGACTTGGCGTGAGTTCGAGGAAACAACTGGAGTATCCAAATCTGCCCTTGCTAATATTATTGATAATC
CCAACGTTATTCCTAGTTTAGAAACTTTATCAAAAGTTTCTAGAGCATTTAATATACCTCTCTGGCGTGTCGTAGAAATG
GCTGGATATGATCTAGATTTAGATACAACCGATCCTGATCATACAAAACGATTATCCAAACTTATGGAAGTAATGCCTCA
ATATAAACCTGTATTAGAACACCTTCAGAAATTAGATAAAGAAGATATCGATGGAGTGCTTGCCTATCTTGAAGTATTAG
CACGCCGCCGAGCCACAACATAG

Upstream 100 bases:

>100_bases
CTTGCAAATTATTCATAGAACTCCTTTACTTTTGAAAGTTTTTTTGACTATCTATCGGACATTCTAGTGTAGTTATTTGT
AGTTGTCAAGAGTACAATCA

Downstream 100 bases:

>100_bases
GCCTATAAAGGCTATATGGTATTTTTTACAATGAGACAACTCTCAAATAAGATCAAACAACACTCAGAAGTCGAGGGAAG
TTTACGTGCACTGTCGATTA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MPYTKYYRLVHEVRMTELSIFLKKQMKDNEWTWREFEETTGVSKSALANIIDNPNVIPSLETLSKVSRAFNIPLWRVVEM
AGYDLDLDTTDPDHTKRLSKLMEVMPQYKPVLEHLQKLDKEDIDGVLAYLEVLARRRATT

Sequences:

>Translated_140_residues
MPYTKYYRLVHEVRMTELSIFLKKQMKDNEWTWREFEETTGVSKSALANIIDNPNVIPSLETLSKVSRAFNIPLWRVVEM
AGYDLDLDTTDPDHTKRLSKLMEVMPQYKPVLEHLQKLDKEDIDGVLAYLEVLARRRATT
>Mature_139_residues
PYTKYYRLVHEVRMTELSIFLKKQMKDNEWTWREFEETTGVSKSALANIIDNPNVIPSLETLSKVSRAFNIPLWRVVEMA
GYDLDLDTTDPDHTKRLSKLMEVMPQYKPVLEHLQKLDKEDIDGVLAYLEVLARRRATT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16430; Mature: 16299

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYTKYYRLVHEVRMTELSIFLKKQMKDNEWTWREFEETTGVSKSALANIIDNPNVIPSL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCH
ETLSKVSRAFNIPLWRVVEMAGYDLDLDTTDPDHTKRLSKLMEVMPQYKPVLEHLQKLDK
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
EDIDGVLAYLEVLARRRATT
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PYTKYYRLVHEVRMTELSIFLKKQMKDNEWTWREFEETTGVSKSALANIIDNPNVIPSL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCH
ETLSKVSRAFNIPLWRVVEMAGYDLDLDTTDPDHTKRLSKLMEVMPQYKPVLEHLQKLDK
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
EDIDGVLAYLEVLARRRATT
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA