| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897874
Identifier: 159897874
GI number: 159897874
Start: 1563290
End: 1563790
Strand: Reverse
Name: 159897874
Synonym: Haur_1348
Alternate gene names: NA
Gene position: 1563790-1563290 (Counterclockwise)
Preceding gene: 159897876
Following gene: 159897873
Centisome position: 24.64
GC content: 45.51
Gene sequence:
>501_bases ATGACTCAACCAAACTCATTGCATCAAATTATGACTGCGTTAGGTGGTTCCCTCTCGTCGGATAAGGGCGATTCTACCGA CTATATTGTTCCACTCCCAACATTTGATCATACCAGTGTTGTCCAAACACTCTTTACCCAATTAGCCCATGTCACGCCAG GGGTTCTTGGGTCTGTTTTAATGAATAGTGCTGGTGATGTGCTTGCGTCAACGTTACCCGATCATCTGAATGTGATGCAG GTTACGGCGATTAGTGGGCCATGGTTACGCATTGCTGATAAGGTGGCACAGAGCGTTGGATTAGGGCATACCGAAGAAAG TTTGATCCGAACGGCAGAGGGGTTTTGTAGCATTCGACCAATTCATAGTCATATTGTTATTACCGTCCTCAGATCGCAAT CAAATTTAGGCTTCTTTTGGCTGAACATGGCCGATATGGAGCAACTATTAATATCAGTCTTGGCTGGAATTCCGCTTGAT CACGATGGATCGCAGTACTGA
Upstream 100 bases:
>100_bases CAAATGTGCGTAAGGTTGTTCGTTAGTTGCAGTTCCTAGGATTACCATCACCACGCGAATGGATACGGCAATTGCTCGGT AGCAACAAGGATGTTCTGCT
Downstream 100 bases:
>100_bases TGGATGGCTGCGATGCGACAAAATAGCAGTGTATGAGTTCGCAGGTGTGCATTCAATGATGCTATAGATGGCTCCCATAA AAAAAGACTAGACAATGCTA
Product: roadblock/LC7 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MTQPNSLHQIMTALGGSLSSDKGDSTDYIVPLPTFDHTSVVQTLFTQLAHVTPGVLGSVLMNSAGDVLASTLPDHLNVMQ VTAISGPWLRIADKVAQSVGLGHTEESLIRTAEGFCSIRPIHSHIVITVLRSQSNLGFFWLNMADMEQLLISVLAGIPLD HDGSQY
Sequences:
>Translated_166_residues MTQPNSLHQIMTALGGSLSSDKGDSTDYIVPLPTFDHTSVVQTLFTQLAHVTPGVLGSVLMNSAGDVLASTLPDHLNVMQ VTAISGPWLRIADKVAQSVGLGHTEESLIRTAEGFCSIRPIHSHIVITVLRSQSNLGFFWLNMADMEQLLISVLAGIPLD HDGSQY >Mature_165_residues TQPNSLHQIMTALGGSLSSDKGDSTDYIVPLPTFDHTSVVQTLFTQLAHVTPGVLGSVLMNSAGDVLASTLPDHLNVMQV TAISGPWLRIADKVAQSVGLGHTEESLIRTAEGFCSIRPIHSHIVITVLRSQSNLGFFWLNMADMEQLLISVLAGIPLDH DGSQY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17833; Mature: 17701
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPNSLHQIMTALGGSLSSDKGDSTDYIVPLPTFDHTSVVQTLFTQLAHVTPGVLGSVL CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHH MNSAGDVLASTLPDHLNVMQVTAISGPWLRIADKVAQSVGLGHTEESLIRTAEGFCSIRP HHCCHHHHHHHCCHHHCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC IHSHIVITVLRSQSNLGFFWLNMADMEQLLISVLAGIPLDHDGSQY HHHHEEEEEEECCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TQPNSLHQIMTALGGSLSSDKGDSTDYIVPLPTFDHTSVVQTLFTQLAHVTPGVLGSVL CCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHH MNSAGDVLASTLPDHLNVMQVTAISGPWLRIADKVAQSVGLGHTEESLIRTAEGFCSIRP HHCCHHHHHHHCCHHHCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC IHSHIVITVLRSQSNLGFFWLNMADMEQLLISVLAGIPLDHDGSQY HHHHEEEEEEECCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA