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The map label for this gene is yijO [H]

Identifier: 159897813

GI number: 159897813

Start: 1496162

End: 1496668

Strand: Direct

Name: yijO [H]

Synonym: Haur_1284

Alternate gene names: 159897813

Gene position: 1496162-1496668 (Clockwise)

Preceding gene: 159897808

Following gene: 159897814

Centisome position: 23.57

GC content: 46.55

Gene sequence:

>507_bases
ATGAACCTTAAAACCTACATTACAATAAAGAACAAATGTTTTGATTTAAATCATGGATTTGCTATAATAGCTGTATTTGG
GGGTAGTATGAAACTCGCATCAGCAGCAACCAAGCAGCTATTATGGCAAGCTCGCCAATATATTGATGGCACTTATGCCG
AGCACGTAGAGTTACCACAGCTGGCCGAGCAAATTGGCTTCTCGCACTATCACTTTTTGCGGCTTTTTCAACGCAATTTT
GCCATTACTCCTCACCAGTATTTGATTCATCGGCGGATTGAGCGAGCGCGTGAGTTGCTGGTCGCCAGCGATTTATCAGT
AACCGAGGTCTGTTTTGCGGTTGGTTTTCAGAGCCTCGGCTCGTTTAGTAGCCTATTTCAACGCAGCACTGGCCATGCGC
CCAGCCATTATCGCCGCCGCAACTTCCAAGGTTTCAGCCTACCTCGGCGCTTTGTACCCTCATGCTATCTCACCATTTTT
GGCATTGGCTTGAGCTACAAGCACTAA

Upstream 100 bases:

>100_bases
TTCGTATTCCCTCTCCTTCCGAGCGAGCGAGGGGAAACCACGCAACGAAACGCCTCTCGCCCGCCGCCGTGGGAGCGGGG
TTGAGGGTGAGGGAACGAAG

Downstream 100 bases:

>100_bases
CTGCGCAATTTTCAAGAAGTTTTTATCCGCCGATCAGCCTATACTCGCTATATGAACAAATGTTCGTAATGATGTGTTAG
GAGCAACCCAATGATTACCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNLKTYITIKNKCFDLNHGFAIIAVFGGSMKLASAATKQLLWQARQYIDGTYAEHVELPQLAEQIGFSHYHFLRLFQRNF
AITPHQYLIHRRIERARELLVASDLSVTEVCFAVGFQSLGSFSSLFQRSTGHAPSHYRRRNFQGFSLPRRFVPSCYLTIF
GIGLSYKH

Sequences:

>Translated_168_residues
MNLKTYITIKNKCFDLNHGFAIIAVFGGSMKLASAATKQLLWQARQYIDGTYAEHVELPQLAEQIGFSHYHFLRLFQRNF
AITPHQYLIHRRIERARELLVASDLSVTEVCFAVGFQSLGSFSSLFQRSTGHAPSHYRRRNFQGFSLPRRFVPSCYLTIF
GIGLSYKH
>Mature_168_residues
MNLKTYITIKNKCFDLNHGFAIIAVFGGSMKLASAATKQLLWQARQYIDGTYAEHVELPQLAEQIGFSHYHFLRLFQRNF
AITPHQYLIHRRIERARELLVASDLSVTEVCFAVGFQSLGSFSSLFQRSTGHAPSHYRRRNFQGFSLPRRFVPSCYLTIF
GIGLSYKH

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=111, Percent_Identity=37.8378378378378, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1787987, Length=94, Percent_Identity=32.9787234042553, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 19336; Mature: 19336

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKTYITIKNKCFDLNHGFAIIAVFGGSMKLASAATKQLLWQARQYIDGTYAEHVELPQ
CCCEEEEEECCCEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHH
LAEQIGFSHYHFLRLFQRNFAITPHQYLIHRRIERARELLVASDLSVTEVCFAVGFQSLG
HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SFSSLFQRSTGHAPSHYRRRNFQGFSLPRRFVPSCYLTIFGIGLSYKH
HHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNLKTYITIKNKCFDLNHGFAIIAVFGGSMKLASAATKQLLWQARQYIDGTYAEHVELPQ
CCCEEEEEECCCEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHH
LAEQIGFSHYHFLRLFQRNFAITPHQYLIHRRIERARELLVASDLSVTEVCFAVGFQSLG
HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SFSSLFQRSTGHAPSHYRRRNFQGFSLPRRFVPSCYLTIFGIGLSYKH
HHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]