| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is resE [H]
Identifier: 159897796
GI number: 159897796
Start: 1477332
End: 1478960
Strand: Direct
Name: resE [H]
Synonym: Haur_1267
Alternate gene names: 159897796
Gene position: 1477332-1478960 (Clockwise)
Preceding gene: 159897795
Following gene: 159897797
Centisome position: 23.28
GC content: 50.89
Gene sequence:
>1629_bases ATGACCGAACGCCAACCCAACGAAGCCTCTGAGTATAGCCGCGCTCCGGCTATCCTTGTTGTTGATGATGATACGTCGAT TTGCCGCTATTGCTCGAAAGCACTTCGCAATGTTGGCTATCAGGTTGTTGACACCACATCGGGTTTAGTCGCGCTTGATC ATTTGCGCCATCAAGCGTTTGATTTGTTGTTGACTGATATTAAAATGCCTGAGATGAGTGGACTTGAGTTGGCTCGGCAG GCGCGGGCGTTGAATCCAGGCTTGGCGGTCATCATCATGACTGGCCAAACCACCTTGGAAACCTTGCGCGAGGCCGTTCA ACAGGGCGTAACCAGTTATCTTAGCAAGCCTTTCGAAATTGAAGAAATGCGCTTGACAGTAGCTCAAGTGCTGCATCAAC GGGCAATGGTGTTGCAAAAGGTCAAGCTTGAAGCGATTGTGCATCAACTTGAATTAAGCAGCGCCTTTAATCGCACATTG TCGCTCAGCGAATTGTGTGGCGAGATTGTACGGGTCACCAATAGCGAAATTGGCTGTCAATTTGGCTATTTTCTGTTGCA ACAACCCGATGAATCGCCGCGTTTGTTGATGGGACAGGCGAGCCATCCTCAATTAAATGAGGCTGGCTGGCAGCTTTTGC AAGAAACCTATCAACAGCAACAGCCAATTCAAACCACGCTCAAGCTAGCCGAGGCTGACCACAACGTGATCACCTTTCCG CTGCGAGTTGGTGGAGCGATGATCGGCAGTGCCTTGTTTGATTATACTGAGGCCTTGCCCAGTGCTCAGATCGAAGGCAT GATGCTGTTGCTCAATCAAGCGGCAGCAGCTCTGAATAATGCCCAACTCTTCACCCGTGTGCAAGAAGCCAATAGCCGCT TGCAAGAGCTTGATCGGCTAAAGAGTGAATTTATTTCGATTACGTCGCATGAGTTGCGCACGCCGCTGGCCGTGGTTTTA GGCTATGGCATCGTGATTCAAGAGCGTAGCGAGCCGCCAATTCGTACCTATCTTGATCGCTTGGTCGAGAGCGCTCAGCG CATGAAAGAAATTATCGACGATATGACCCATCTGCGGCGGTTGGATACCCGCCAAACCGAGCTGCAGCTGGAGCCAATTG TGCTCGATGAATTGCTCTACGAAGTGATCGATCAAATGCATGGGCTGGCCCAAAAGAAATCGCAAACACTTTCATTGGCA ACCCCACCTGATGCCTTGTGCACCTTGTATGCCGATCGGGCCAAAATTGCCTTGGTGCTGATGAGTTTGCTTTCGAATGC CATGAAATTCACCCCTGCTGAGGGGATGATTACGGTACGGGCATGGTGTGAGACGGTTCAATCAGTGCCCTATGAACATG CCTATTTCAAAGGCACGCTGCAACCTGGCCCATGGGTCTTTGTCAGCGTCAGCGATTCAGGCATTGGCATTCCTGAGTCC CATCTGCAACGGATATTCGAGCGTTTTTACCAAGTAGCCCAATCACTCACCCGAGAGTATGGGGGTACTGGGGTAGGTTT AGCCCTTGTGCAAGGACTCGTTGCATTGCATAATGGTCATGTTTGGGTTCAAAGCGAAGAAGGTCGCGGCAGTACGTTTA CGGTTGCACTGCCACAGCGGGGGCTTTAG
Upstream 100 bases:
>100_bases CCCTTAGTGATGGGAAGCAAACGCTGCTACCGGCAGCAGCTCTTGAACCCCTATCACCCTGATCCTACCAATCTAGGTTG ATCGAGGAGTGTAGTTGGCC
Downstream 100 bases:
>100_bases CCTCACAGGTAGGAGTTTGTATGGGCTATAGGGTCTTTGTGGTAGCTGGTGATAATCCGGTGCTTCAATCGCTGAGTACG GCTGTCACAGGCGAAATTGA
Product: response regulator receiver sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 542; Mature: 541
Protein sequence:
>542_residues MTERQPNEASEYSRAPAILVVDDDTSICRYCSKALRNVGYQVVDTTSGLVALDHLRHQAFDLLLTDIKMPEMSGLELARQ ARALNPGLAVIIMTGQTTLETLREAVQQGVTSYLSKPFEIEEMRLTVAQVLHQRAMVLQKVKLEAIVHQLELSSAFNRTL SLSELCGEIVRVTNSEIGCQFGYFLLQQPDESPRLLMGQASHPQLNEAGWQLLQETYQQQQPIQTTLKLAEADHNVITFP LRVGGAMIGSALFDYTEALPSAQIEGMMLLLNQAAAALNNAQLFTRVQEANSRLQELDRLKSEFISITSHELRTPLAVVL GYGIVIQERSEPPIRTYLDRLVESAQRMKEIIDDMTHLRRLDTRQTELQLEPIVLDELLYEVIDQMHGLAQKKSQTLSLA TPPDALCTLYADRAKIALVLMSLLSNAMKFTPAEGMITVRAWCETVQSVPYEHAYFKGTLQPGPWVFVSVSDSGIGIPES HLQRIFERFYQVAQSLTREYGGTGVGLALVQGLVALHNGHVWVQSEEGRGSTFTVALPQRGL
Sequences:
>Translated_542_residues MTERQPNEASEYSRAPAILVVDDDTSICRYCSKALRNVGYQVVDTTSGLVALDHLRHQAFDLLLTDIKMPEMSGLELARQ ARALNPGLAVIIMTGQTTLETLREAVQQGVTSYLSKPFEIEEMRLTVAQVLHQRAMVLQKVKLEAIVHQLELSSAFNRTL SLSELCGEIVRVTNSEIGCQFGYFLLQQPDESPRLLMGQASHPQLNEAGWQLLQETYQQQQPIQTTLKLAEADHNVITFP LRVGGAMIGSALFDYTEALPSAQIEGMMLLLNQAAAALNNAQLFTRVQEANSRLQELDRLKSEFISITSHELRTPLAVVL GYGIVIQERSEPPIRTYLDRLVESAQRMKEIIDDMTHLRRLDTRQTELQLEPIVLDELLYEVIDQMHGLAQKKSQTLSLA TPPDALCTLYADRAKIALVLMSLLSNAMKFTPAEGMITVRAWCETVQSVPYEHAYFKGTLQPGPWVFVSVSDSGIGIPES HLQRIFERFYQVAQSLTREYGGTGVGLALVQGLVALHNGHVWVQSEEGRGSTFTVALPQRGL >Mature_541_residues TERQPNEASEYSRAPAILVVDDDTSICRYCSKALRNVGYQVVDTTSGLVALDHLRHQAFDLLLTDIKMPEMSGLELARQA RALNPGLAVIIMTGQTTLETLREAVQQGVTSYLSKPFEIEEMRLTVAQVLHQRAMVLQKVKLEAIVHQLELSSAFNRTLS LSELCGEIVRVTNSEIGCQFGYFLLQQPDESPRLLMGQASHPQLNEAGWQLLQETYQQQQPIQTTLKLAEADHNVITFPL RVGGAMIGSALFDYTEALPSAQIEGMMLLLNQAAAALNNAQLFTRVQEANSRLQELDRLKSEFISITSHELRTPLAVVLG YGIVIQERSEPPIRTYLDRLVESAQRMKEIIDDMTHLRRLDTRQTELQLEPIVLDELLYEVIDQMHGLAQKKSQTLSLAT PPDALCTLYADRAKIALVLMSLLSNAMKFTPAEGMITVRAWCETVQSVPYEHAYFKGTLQPGPWVFVSVSDSGIGIPESH LQRIFERFYQVAQSLTREYGGTGVGLALVQGLVALHNGHVWVQSEEGRGSTFTVALPQRGL
Specific function: Member of the two-component regulatory system resD/resE involved in the global regulation of aerobic and anaerobic respiration. Probably phosphorylates resD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=245, Percent_Identity=31.4285714285714, Blast_Score=119, Evalue=6e-28, Organism=Escherichia coli, GI145693157, Length=260, Percent_Identity=29.6153846153846, Blast_Score=115, Evalue=7e-27, Organism=Escherichia coli, GI48994928, Length=254, Percent_Identity=31.8897637795276, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1786600, Length=251, Percent_Identity=30.2788844621514, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1786783, Length=259, Percent_Identity=29.3436293436293, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1790437, Length=114, Percent_Identity=42.1052631578947, Blast_Score=99, Evalue=8e-22, Organism=Escherichia coli, GI1788393, Length=255, Percent_Identity=29.0196078431373, Blast_Score=93, Evalue=5e-20, Organism=Escherichia coli, GI87081816, Length=258, Percent_Identity=28.6821705426357, Blast_Score=89, Evalue=7e-19, Organism=Escherichia coli, GI1788549, Length=260, Percent_Identity=26.9230769230769, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1790861, Length=231, Percent_Identity=31.6017316017316, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1788713, Length=245, Percent_Identity=26.1224489795918, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1790436, Length=232, Percent_Identity=28.448275862069, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1790299, Length=105, Percent_Identity=41.9047619047619, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1790346, Length=226, Percent_Identity=27.4336283185841, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1788905, Length=136, Percent_Identity=34.5588235294118, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1788550, Length=127, Percent_Identity=35.4330708661417, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1788279, Length=252, Percent_Identity=22.6190476190476, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786912, Length=261, Percent_Identity=23.3716475095785, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1786784, Length=180, Percent_Identity=26.1111111111111, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1790860, Length=204, Percent_Identity=25.4901960784314, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322000, Length=117, Percent_Identity=31.6239316239316, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 60413; Mature: 60282
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTERQPNEASEYSRAPAILVVDDDTSICRYCSKALRNVGYQVVDTTSGLVALDHLRHQAF CCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH DLLLTDIKMPEMSGLELARQARALNPGLAVIIMTGQTTLETLREAVQQGVTSYLSKPFEI HHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCH EEMRLTVAQVLHQRAMVLQKVKLEAIVHQLELSSAFNRTLSLSELCGEIVRVTNSEIGCQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH FGYFLLQQPDESPRLLMGQASHPQLNEAGWQLLQETYQQQQPIQTTLKLAEADHNVITFP HHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEE LRVGGAMIGSALFDYTEALPSAQIEGMMLLLNQAAAALNNAQLFTRVQEANSRLQELDRL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH KSEFISITSHELRTPLAVVLGYGIVIQERSEPPIRTYLDRLVESAQRMKEIIDDMTHLRR HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LDTRQTELQLEPIVLDELLYEVIDQMHGLAQKKSQTLSLATPPDALCTLYADRAKIALVL HCCCHHHHEECHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH MSLLSNAMKFTPAEGMITVRAWCETVQSVPYEHAYFKGTLQPGPWVFVSVSDSGIGIPES HHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCCCCHH HLQRIFERFYQVAQSLTREYGGTGVGLALVQGLVALHNGHVWVQSEEGRGSTFTVALPQR HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCC GL CC >Mature Secondary Structure TERQPNEASEYSRAPAILVVDDDTSICRYCSKALRNVGYQVVDTTSGLVALDHLRHQAF CCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH DLLLTDIKMPEMSGLELARQARALNPGLAVIIMTGQTTLETLREAVQQGVTSYLSKPFEI HHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCH EEMRLTVAQVLHQRAMVLQKVKLEAIVHQLELSSAFNRTLSLSELCGEIVRVTNSEIGCQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH FGYFLLQQPDESPRLLMGQASHPQLNEAGWQLLQETYQQQQPIQTTLKLAEADHNVITFP HHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEE LRVGGAMIGSALFDYTEALPSAQIEGMMLLLNQAAAALNNAQLFTRVQEANSRLQELDRL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH KSEFISITSHELRTPLAVVLGYGIVIQERSEPPIRTYLDRLVESAQRMKEIIDDMTHLRR HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LDTRQTELQLEPIVLDELLYEVIDQMHGLAQKKSQTLSLATPPDALCTLYADRAKIALVL HCCCHHHHEECHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH MSLLSNAMKFTPAEGMITVRAWCETVQSVPYEHAYFKGTLQPGPWVFVSVSDSGIGIPES HHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCCCCCCHH HLQRIFERFYQVAQSLTREYGGTGVGLALVQGLVALHNGHVWVQSEEGRGSTFTVALPQR HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCC GL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934829; 9384377; 8631715 [H]