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The map label for this gene is oppC [H]

Identifier: 159897754

GI number: 159897754

Start: 1417675

End: 1418673

Strand: Direct

Name: oppC [H]

Synonym: Haur_1225

Alternate gene names: 159897754

Gene position: 1417675-1418673 (Clockwise)

Preceding gene: 159897753

Following gene: 159897755

Centisome position: 22.34

GC content: 49.65

Gene sequence:

>999_bases
ATGGCAACCGCATCGAATGTGGCAGGCAAAAGCCCTGCCCAGGCTCAAGAATTTACGCGGCCTGTTCGGAGTCTTTGGAG
CGATGCTTGGTTACGTCTGCGGCGCAATCGTTTAGCAATGGCAAGTATTGTCTATTTGTTTTTGCTGGCGTTGGTAGCAA
TTTTCGCACCAGTCATTGCCCCGCACTCGCCTAGCCGCCCAACCTCAACCGAATTACGCGAACGAGGCACCTATCGGCAA
GCTGCTTGGATTGTTGATGAGAAAAACCCTAAACGCAGTGGGGTTTGGAAATTTCCCTTAGGAACAGATTCTGCTGGCGG
CGATGTGCTCAGTCGCTTAATCTATGGAACGCGGGTTTCGATGGTTGTGGGCTTCATTCCCATGATCTTTACCCTGACGA
TCGGGATCACGATTGGCTTGGTTTCAGGTTTTGCCGGTGGCAAACTCGATAGTTTGCTCATGCGGTTTACTGATATTGTC
TTTTCGCTGCCCGATATCTTGTTCTTTATTATTGTGCAAACGGCCTTCAGTCAAACCGCCTTTGGCAAGACCTTCAATGG
TTTATTGTTGATTTTCTTATCATTCTCAGCGGTCAACTGGGCTAGCGTTGCGCGTTTGGTGCGTGGCCAAGTGCTTTCTT
TAAAAGAAAAAGAGTTTGTTGAAGCAGCAGAGGCGATTGGGGTTCGGCGTGGCTCAATTTTATTTCGCCATATTTTGCCC
AACACGCTCGCCCCAATTATTGTGGCAGGTGCGTTTATTGTGCCAAGCGCGATTGTCACCGAAGCAACCCTGAGCTTTTT
GGGGATTGGCATCCAGCCTGATACCAACCCCAATAATCCGTTCCCTACCAGCTGGGGCCAGATGATTTTGGAAGGTAAGT
CGGCGATTGATTCGCAACCATGGATTCTGATCGCGTCGGCGATTGCAATTGCTTCAATTACGATTGCTTTTGTGGCTTTG
GGCGATGGTTTACGTGATGCGCTTGATCCCCGCCAATAG

Upstream 100 bases:

>100_bases
CTGTTTTTCTCATTGCTGGTGGCTTTAGGCAATATTATGGTCGATCTTTCGTATGGCTTGATTGATCCGCGGATTCGTAA
CAGCTAGGAGACCCGAACGT

Downstream 100 bases:

>100_bases
ATCAAGGCAAATTGCTCGATATCATGAGGAGCATATATGGCTGAAGCACCCTTGCTTGAGGTCAAAAACCTACAAGTTCA
ATTTAAAACTGCTGATGGCG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MATASNVAGKSPAQAQEFTRPVRSLWSDAWLRLRRNRLAMASIVYLFLLALVAIFAPVIAPHSPSRPTSTELRERGTYRQ
AAWIVDEKNPKRSGVWKFPLGTDSAGGDVLSRLIYGTRVSMVVGFIPMIFTLTIGITIGLVSGFAGGKLDSLLMRFTDIV
FSLPDILFFIIVQTAFSQTAFGKTFNGLLLIFLSFSAVNWASVARLVRGQVLSLKEKEFVEAAEAIGVRRGSILFRHILP
NTLAPIIVAGAFIVPSAIVTEATLSFLGIGIQPDTNPNNPFPTSWGQMILEGKSAIDSQPWILIASAIAIASITIAFVAL
GDGLRDALDPRQ

Sequences:

>Translated_332_residues
MATASNVAGKSPAQAQEFTRPVRSLWSDAWLRLRRNRLAMASIVYLFLLALVAIFAPVIAPHSPSRPTSTELRERGTYRQ
AAWIVDEKNPKRSGVWKFPLGTDSAGGDVLSRLIYGTRVSMVVGFIPMIFTLTIGITIGLVSGFAGGKLDSLLMRFTDIV
FSLPDILFFIIVQTAFSQTAFGKTFNGLLLIFLSFSAVNWASVARLVRGQVLSLKEKEFVEAAEAIGVRRGSILFRHILP
NTLAPIIVAGAFIVPSAIVTEATLSFLGIGIQPDTNPNNPFPTSWGQMILEGKSAIDSQPWILIASAIAIASITIAFVAL
GDGLRDALDPRQ
>Mature_331_residues
ATASNVAGKSPAQAQEFTRPVRSLWSDAWLRLRRNRLAMASIVYLFLLALVAIFAPVIAPHSPSRPTSTELRERGTYRQA
AWIVDEKNPKRSGVWKFPLGTDSAGGDVLSRLIYGTRVSMVVGFIPMIFTLTIGITIGLVSGFAGGKLDSLLMRFTDIVF
SLPDILFFIIVQTAFSQTAFGKTFNGLLLIFLSFSAVNWASVARLVRGQVLSLKEKEFVEAAEAIGVRRGSILFRHILPN
TLAPIIVAGAFIVPSAIVTEATLSFLGIGIQPDTNPNNPFPTSWGQMILEGKSAIDSQPWILIASAIAIASITIAFVALG
DGLRDALDPRQ

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=330, Percent_Identity=36.6666666666667, Blast_Score=180, Evalue=9e-47,
Organism=Escherichia coli, GI1787054, Length=320, Percent_Identity=33.125, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787760, Length=299, Percent_Identity=30.1003344481605, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788505, Length=233, Percent_Identity=34.3347639484979, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789964, Length=302, Percent_Identity=33.4437086092715, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789889, Length=233, Percent_Identity=31.7596566523605, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787549, Length=238, Percent_Identity=28.9915966386555, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35960; Mature: 35829

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure 
ATASNVAGKSPAQAQEFTRPVRSLWSDAWLRLRRNRLAMASIVYLFLLALVAIFAPVIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC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HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]