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The map label for this gene is ybbK [C]

Identifier: 159897045

GI number: 159897045

Start: 597910

End: 598680

Strand: Reverse

Name: ybbK [C]

Synonym: Haur_0515

Alternate gene names: 159897045

Gene position: 598680-597910 (Counterclockwise)

Preceding gene: 159897046

Following gene: 159897044

Centisome position: 9.43

GC content: 45.78

Gene sequence:

>771_bases
ATGGGTGATGATGTTTTGGGTTTAATCATTCTGCTATTAATTATTATCACGATCACTGCAATCCGTTTCTTTCCAGCTAG
CATAATTTATGAGCATGAACGTGGCTTGCTTTATAAACATGGCAAGTTTCAACGGGTGCTTGAGCCTGGCAAATACCGCT
TTCTACGTAATGCTTATCAGATCTCCAAGATCGATGTGCGGCCAAGTTCACTTAGTTTGAGCGGCCAAGAAATGTTCAGC
GCCGATTTGATCAGTGTTAAGCTCAATTTGCTGGCTAATTTCCAAATCGACCAGCCTGATCGTTGGACGCATAGCCATAT
CAGTGCCCAAACAGTTGTTTATAATGAGTTACAGGTGGCCTTGCGCGAGGTGATCGCTGGCTATACCCTCGATCAACTCT
TGGCTGATCGCAGCATGATTGCTCCGCAAATTTTGGCGCTGGTACAACCCAAGGCCAACGAACTGGGCGCAAGCATTCAA
ACAATTCAAATCAAAGATTTTAGTTTGCCTGCCGAGTTGAAACGGGCTGCCTTGCAACAAGCCAAAGTCCAACGCGAAAC
TGCCGCTGCACTTGAACAAGCGCGTGGTGAGCAAGCAGTTCTACGCAGTTTAGCCAATGCTGCTCGCATGCTTGAGCGCA
ACCCAGCCTTGATGAATTTGCGGGTATTGCAAGCACTTGATAGCAACAAGAGCAATACAATCGTGCTGCATGTGCATCAA
TCAAACAATGATCAAACAATTGATAGCGAATTTACTCAGCCTGAAGTTTAG

Upstream 100 bases:

>100_bases
TCCACTATTGTACCCGCAAAAGGCTCTGCAAAGCTACGGGCTTTCCGCCGATTGTGGTATGTGGGGCGGCGTGTAACATC
ATTTTTGAGAGGTAGATCGT

Downstream 100 bases:

>100_bases
GAACATCTATGCGTGGTTTGACCCTCGGCAAATTTGCCCCCTTGCACAAAGGCCATCAACTGATGATTGAAACAGCGCTC
AGCGAAGTGGCTGAGTTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MGDDVLGLIILLLIIITITAIRFFPASIIYEHERGLLYKHGKFQRVLEPGKYRFLRNAYQISKIDVRPSSLSLSGQEMFS
ADLISVKLNLLANFQIDQPDRWTHSHISAQTVVYNELQVALREVIAGYTLDQLLADRSMIAPQILALVQPKANELGASIQ
TIQIKDFSLPAELKRAALQQAKVQRETAAALEQARGEQAVLRSLANAARMLERNPALMNLRVLQALDSNKSNTIVLHVHQ
SNNDQTIDSEFTQPEV

Sequences:

>Translated_256_residues
MGDDVLGLIILLLIIITITAIRFFPASIIYEHERGLLYKHGKFQRVLEPGKYRFLRNAYQISKIDVRPSSLSLSGQEMFS
ADLISVKLNLLANFQIDQPDRWTHSHISAQTVVYNELQVALREVIAGYTLDQLLADRSMIAPQILALVQPKANELGASIQ
TIQIKDFSLPAELKRAALQQAKVQRETAAALEQARGEQAVLRSLANAARMLERNPALMNLRVLQALDSNKSNTIVLHVHQ
SNNDQTIDSEFTQPEV
>Mature_255_residues
GDDVLGLIILLLIIITITAIRFFPASIIYEHERGLLYKHGKFQRVLEPGKYRFLRNAYQISKIDVRPSSLSLSGQEMFSA
DLISVKLNLLANFQIDQPDRWTHSHISAQTVVYNELQVALREVIAGYTLDQLLADRSMIAPQILALVQPKANELGASIQT
IQIKDFSLPAELKRAALQQAKVQRETAAALEQARGEQAVLRSLANAARMLERNPALMNLRVLQALDSNKSNTIVLHVHQS
NNDQTIDSEFTQPEV

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI21686995, Length=249, Percent_Identity=28.9156626506024, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI221316744, Length=249, Percent_Identity=28.9156626506024, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI38016911, Length=234, Percent_Identity=26.9230769230769, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI7657615, Length=237, Percent_Identity=27.0042194092827, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17569499, Length=240, Percent_Identity=28.3333333333333, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17570459, Length=240, Percent_Identity=27.0833333333333, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17569497, Length=243, Percent_Identity=26.3374485596708, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI32566490, Length=235, Percent_Identity=27.2340425531915, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17570161, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193210507, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17569493, Length=229, Percent_Identity=24.8908296943231, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193209764, Length=229, Percent_Identity=24.8908296943231, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71987621, Length=237, Percent_Identity=26.5822784810127, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71987612, Length=237, Percent_Identity=26.5822784810127, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI25153583, Length=243, Percent_Identity=27.1604938271605, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71989948, Length=219, Percent_Identity=26.9406392694064, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573263, Length=229, Percent_Identity=23.1441048034935, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21356845, Length=227, Percent_Identity=24.6696035242291, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI18860517, Length=244, Percent_Identity=25.4098360655738, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45556022, Length=244, Percent_Identity=25.4098360655738, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI62484274, Length=241, Percent_Identity=24.896265560166, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI62484448, Length=241, Percent_Identity=24.896265560166, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281365664, Length=241, Percent_Identity=24.896265560166, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281361631, Length=221, Percent_Identity=24.4343891402715, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281361633, Length=221, Percent_Identity=24.4343891402715, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24657857, Length=241, Percent_Identity=24.896265560166, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28692; Mature: 28560

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDDVLGLIILLLIIITITAIRFFPASIIYEHERGLLYKHGKFQRVLEPGKYRFLRNAYQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCHHHHHCCHHHHHHHHHHH
ISKIDVRPSSLSLSGQEMFSADLISVKLNLLANFQIDQPDRWTHSHISAQTVVYNELQVA
HEEEECCCCCCCCCHHHHHHHHHHHHEEEHHEECCCCCCCCCCHHHCCHHHHHHHHHHHH
LREVIAGYTLDQLLADRSMIAPQILALVQPKANELGASIQTIQIKDFSLPAELKRAALQQ
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCHHHHHHHHHH
AKVQRETAAALEQARGEQAVLRSLANAARMLERNPALMNLRVLQALDSNKSNTIVLHVHQ
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEE
SNNDQTIDSEFTQPEV
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GDDVLGLIILLLIIITITAIRFFPASIIYEHERGLLYKHGKFQRVLEPGKYRFLRNAYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCHHHHHCCHHHHHHHHHHH
ISKIDVRPSSLSLSGQEMFSADLISVKLNLLANFQIDQPDRWTHSHISAQTVVYNELQVA
HEEEECCCCCCCCCHHHHHHHHHHHHEEEHHEECCCCCCCCCCHHHCCHHHHHHHHHHHH
LREVIAGYTLDQLLADRSMIAPQILALVQPKANELGASIQTIQIKDFSLPAELKRAALQQ
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCHHHHHHHHHH
AKVQRETAAALEQARGEQAVLRSLANAARMLERNPALMNLRVLQALDSNKSNTIVLHVHQ
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEE
SNNDQTIDSEFTQPEV
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]