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The map label for this gene is opuBC [H]

Identifier: 159896882

GI number: 159896882

Start: 420701

End: 421642

Strand: Direct

Name: opuBC [H]

Synonym: Haur_0350

Alternate gene names: 159896882

Gene position: 420701-421642 (Clockwise)

Preceding gene: 159896881

Following gene: 159896883

Centisome position: 6.63

GC content: 49.89

Gene sequence:

>942_bases
ATGCGACGTTTCATCCAGCTAACCGTGTTGCTCACGCTCTTGATGACCATTTTAGCCGCTTGTGGCGATGATGCAGCCAG
CAGCACGACAGCTCCCAGTAGCGACCCAAATCCCGCCCCAAGTAGCAATCAAGTAATTCGGATTGCCTCGAAGAATTTTA
CCGAACAGTTTATTGTGGGCGAAATGTATGCCCTCTTGTTGGAACAAGCAGGCTACAAAGTTGAGCGCAAAATTGGCTTA
GGCGCAACCGATGTAGCCCAAGCTGCCATGGAAAAAGGCGAGATCGATATTTATCCTGAGTACACTGGCACTGGCTTGTT
GACTGTACTCAAATTGCCAACCCAAACCGATCCCAAAGCGGTCTATGAAACGGTCAAAAAAGGCTATGCCGAGAAATATC
AAATTGCATGGCTCGACCCTGCGCCAATGAATAATACCCAAGCCTTGGCCATGACCAAAGAAGGTGCTCAGAAATTTGGC
ATCATCACAATCTCCGACATGGCCGCCAAAGCCGGCGAACTGCGCATGATCGGCCCACCCGAGTTCCAAGAACGAGAAGA
TGGCTTGCCTGGCATTCAAGCCAAGTATGGCAACTTCGAACTCAAGGAATATGTACCAGTCGATCCAGGCCTCAAATACA
AGGGCTTGGTCGAAGGCAATGCCGATGTGGTGGTGGCCTTTGGCACGGACGGCGAAATTGCCAATTATGGCTTGGTCGTG
CTCAAAGATGATCGCAACATGTTCCCGCCCTACCAAATCGCTCCGTTGGTGCGCCAAAGCGTTTTGGATGCTAACCCCAA
ATTGGCTGAATTGCTGAATGCCTTGGCTCCCAAACTTGACGATGCGACCATGCAACAGCTCAATTTTGAAGTCAGCGGCA
ATAATCGCAAATACGAAGATGTGGCCAAAGAGTTCCTAACCACCCAAGGTTTGTTGAAATAG

Upstream 100 bases:

>100_bases
TCCGGTGGCTTTGCTCGCAATTCTGGCCGAAATCGTCATGGCCGGGCTGTTGCGATGGGTGCAACCACCACAGTTTTAAG
CTTGTTGGATAGGAGGATTC

Downstream 100 bases:

>100_bases
CGTTCGAGCATAACGTCAATCCATCTCCCTGCCCCTGCGTTACAAGGGTAGGTTTCTGCTGCGAACCACGGATAGACTGG
TTCATCGGTGAATGGATGAG

Product: substrate-binding region of ABC-type glycine betaine transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRRFIQLTVLLTLLMTILAACGDDAASSTTAPSSDPNPAPSSNQVIRIASKNFTEQFIVGEMYALLLEQAGYKVERKIGL
GATDVAQAAMEKGEIDIYPEYTGTGLLTVLKLPTQTDPKAVYETVKKGYAEKYQIAWLDPAPMNNTQALAMTKEGAQKFG
IITISDMAAKAGELRMIGPPEFQEREDGLPGIQAKYGNFELKEYVPVDPGLKYKGLVEGNADVVVAFGTDGEIANYGLVV
LKDDRNMFPPYQIAPLVRQSVLDANPKLAELLNALAPKLDDATMQQLNFEVSGNNRKYEDVAKEFLTTQGLLK

Sequences:

>Translated_313_residues
MRRFIQLTVLLTLLMTILAACGDDAASSTTAPSSDPNPAPSSNQVIRIASKNFTEQFIVGEMYALLLEQAGYKVERKIGL
GATDVAQAAMEKGEIDIYPEYTGTGLLTVLKLPTQTDPKAVYETVKKGYAEKYQIAWLDPAPMNNTQALAMTKEGAQKFG
IITISDMAAKAGELRMIGPPEFQEREDGLPGIQAKYGNFELKEYVPVDPGLKYKGLVEGNADVVVAFGTDGEIANYGLVV
LKDDRNMFPPYQIAPLVRQSVLDANPKLAELLNALAPKLDDATMQQLNFEVSGNNRKYEDVAKEFLTTQGLLK
>Mature_313_residues
MRRFIQLTVLLTLLMTILAACGDDAASSTTAPSSDPNPAPSSNQVIRIASKNFTEQFIVGEMYALLLEQAGYKVERKIGL
GATDVAQAAMEKGEIDIYPEYTGTGLLTVLKLPTQTDPKAVYETVKKGYAEKYQIAWLDPAPMNNTQALAMTKEGAQKFG
IITISDMAAKAGELRMIGPPEFQEREDGLPGIQAKYGNFELKEYVPVDPGLKYKGLVEGNADVVVAFGTDGEIANYGLVV
LKDDRNMFPPYQIAPLVRQSVLDANPKLAELLNALAPKLDDATMQQLNFEVSGNNRKYEDVAKEFLTTQGLLK

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=279, Percent_Identity=32.6164874551971, Blast_Score=140, Evalue=8e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 34163; Mature: 34163

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFIQLTVLLTLLMTILAACGDDAASSTTAPSSDPNPAPSSNQVIRIASKNFTEQFIVG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH
EMYALLLEQAGYKVERKIGLGATDVAQAAMEKGEIDIYPEYTGTGLLTVLKLPTQTDPKA
HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCHHH
VYETVKKGYAEKYQIAWLDPAPMNNTQALAMTKEGAQKFGIITISDMAAKAGELRMIGPP
HHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEHHCHHHCCEEEEEHHHHCCCCEEECCCC
EFQEREDGLPGIQAKYGNFELKEYVPVDPGLKYKGLVEGNADVVVAFGTDGEIANYGLVV
CHHHHHCCCCCCEEECCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEE
LKDDRNMFPPYQIAPLVRQSVLDANPKLAELLNALAPKLDDATMQQLNFEVSGNNRKYED
EECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHEEEEECCCCCCHHH
VAKEFLTTQGLLK
HHHHHHHHHCCCC
>Mature Secondary Structure
MRRFIQLTVLLTLLMTILAACGDDAASSTTAPSSDPNPAPSSNQVIRIASKNFTEQFIVG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH
EMYALLLEQAGYKVERKIGLGATDVAQAAMEKGEIDIYPEYTGTGLLTVLKLPTQTDPKA
HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCHHH
VYETVKKGYAEKYQIAWLDPAPMNNTQALAMTKEGAQKFGIITISDMAAKAGELRMIGPP
HHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEHHCHHHCCEEEEEHHHHCCCCEEECCCC
EFQEREDGLPGIQAKYGNFELKEYVPVDPGLKYKGLVEGNADVVVAFGTDGEIANYGLVV
CHHHHHCCCCCCEEECCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEE
LKDDRNMFPPYQIAPLVRQSVLDANPKLAELLNALAPKLDDATMQQLNFEVSGNNRKYED
EECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHEEEEECCCCCCHHH
VAKEFLTTQGLLK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]