Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159896873

Identifier: 159896873

GI number: 159896873

Start: 406921

End: 407274

Strand: Direct

Name: 159896873

Synonym: Haur_0340

Alternate gene names: NA

Gene position: 406921-407274 (Clockwise)

Preceding gene: 159896872

Following gene: 159896874

Centisome position: 6.41

GC content: 53.39

Gene sequence:

>354_bases
ATGCCAAAGATTACCGTCGGTTCGCAAGCTGCGTTTGAGGTTGCTAGTGGCACACGCTTAGTCAATGCTCTTGAAGATCA
TGGTGTGGATATTTTACATCGCTGTGGCGGCAATGCCCGTTGCACAACCTGTCGAGTTGAGTTTCAGACTGGCGAACCCC
AAGCGATCACCAAGGCTGAATCGTTTAAATTGGCCGAGGCCAAGCTCACTGGGGTGCGTTTGGCATGCCAAATTCTCTGC
GAACACGATATGCAGCTTCAACCTTTACAAACCTTGAGCGCATCGGGCTTGCCCGACCCTGGGCCACGCCCGTCCGATGA
ACTCACCCCAGCCCCTGAATGGCTGAATCGTTAA

Upstream 100 bases:

>100_bases
CTTATTAGCGTTGGTGGTCAATCAATTGCAACAATTGCTCGACGCTGGAGCATTTGATTAATTTGGGTTAACGATTTCCA
CAAATTCTAGGAGGTGGAGT

Downstream 100 bases:

>100_bases
TTGAAGCCAATTGCACCAAGGATCTCCATGCTGAGATGCTTGGTTGAATAGGAATCCGATGAACTTTCCGTTGCTGCGCG
AATTTGGCTCAACTGGTTTG

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MPKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAESFKLAEAKLTGVRLACQILC
EHDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR

Sequences:

>Translated_117_residues
MPKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAESFKLAEAKLTGVRLACQILC
EHDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR
>Mature_116_residues
PKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAESFKLAEAKLTGVRLACQILCE
HDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR

Specific function: Unknown

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12609; Mature: 12478

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAE
CCCCCCCCCCCEEHHCCHHHHHHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCCEECCCC
SFKLAEAKLTGVRLACQILCEHDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
PKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAE
CCCCCCCCCCEEHHCCHHHHHHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCCEECCCC
SFKLAEAKLTGVRLACQILCEHDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA