| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159896873
Identifier: 159896873
GI number: 159896873
Start: 406921
End: 407274
Strand: Direct
Name: 159896873
Synonym: Haur_0340
Alternate gene names: NA
Gene position: 406921-407274 (Clockwise)
Preceding gene: 159896872
Following gene: 159896874
Centisome position: 6.41
GC content: 53.39
Gene sequence:
>354_bases ATGCCAAAGATTACCGTCGGTTCGCAAGCTGCGTTTGAGGTTGCTAGTGGCACACGCTTAGTCAATGCTCTTGAAGATCA TGGTGTGGATATTTTACATCGCTGTGGCGGCAATGCCCGTTGCACAACCTGTCGAGTTGAGTTTCAGACTGGCGAACCCC AAGCGATCACCAAGGCTGAATCGTTTAAATTGGCCGAGGCCAAGCTCACTGGGGTGCGTTTGGCATGCCAAATTCTCTGC GAACACGATATGCAGCTTCAACCTTTACAAACCTTGAGCGCATCGGGCTTGCCCGACCCTGGGCCACGCCCGTCCGATGA ACTCACCCCAGCCCCTGAATGGCTGAATCGTTAA
Upstream 100 bases:
>100_bases CTTATTAGCGTTGGTGGTCAATCAATTGCAACAATTGCTCGACGCTGGAGCATTTGATTAATTTGGGTTAACGATTTCCA CAAATTCTAGGAGGTGGAGT
Downstream 100 bases:
>100_bases TTGAAGCCAATTGCACCAAGGATCTCCATGCTGAGATGCTTGGTTGAATAGGAATCCGATGAACTTTCCGTTGCTGCGCG AATTTGGCTCAACTGGTTTG
Product: ferredoxin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 117; Mature: 116
Protein sequence:
>117_residues MPKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAESFKLAEAKLTGVRLACQILC EHDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR
Sequences:
>Translated_117_residues MPKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAESFKLAEAKLTGVRLACQILC EHDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR >Mature_116_residues PKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAESFKLAEAKLTGVRLACQILCE HDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR
Specific function: Unknown
COG id: COG0633
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12609; Mature: 12478
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 4.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAE CCCCCCCCCCCEEHHCCHHHHHHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCCEECCCC SFKLAEAKLTGVRLACQILCEHDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHCC >Mature Secondary Structure PKITVGSQAAFEVASGTRLVNALEDHGVDILHRCGGNARCTTCRVEFQTGEPQAITKAE CCCCCCCCCCEEHHCCHHHHHHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCCEECCCC SFKLAEAKLTGVRLACQILCEHDMQLQPLQTLSASGLPDPGPRPSDELTPAPEWLNR CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA