| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159896852
Identifier: 159896852
GI number: 159896852
Start: 380290
End: 380922
Strand: Reverse
Name: 159896852
Synonym: Haur_0319
Alternate gene names: NA
Gene position: 380922-380290 (Counterclockwise)
Preceding gene: 159896853
Following gene: 159896849
Centisome position: 6.0
GC content: 51.34
Gene sequence:
>633_bases ATGGACACAACAAGCTTTCCTGAATTTTGGCACTCCATCCCGCGTGACATTGCAGCCCTGATGCCAAACTCACCCGAATT ACCCTACGACGCACATTTGATCTTAAATTCGATCGCTCGCCATTCGCATGAACTATATCAACATTCGCTGCGGGTTGGCC ACATGGCTTGGCATATGAGCCATAGTTTGGGTGTACCAACCTATGAACGGCAGCAGATTTGGTTGGCAGCACTGTTGCAT GATTGTGGCAAAACCCGCATGCCACGAAGCTTGCTGTTTTGCCCACCGCCAGGTAGCCCACATTGGGAAGTTGCGCTCTA TCAACAGCATGTCAACGAAAGCCTTGATGTTTTACATGCTTATCCCACGCTGCATTTGCTCATTCCCTTAGTGGCTGAGC ATCACGAACGGATTGATGGCACAGGTTTTCCACGTGGCAGCAAATATCCAGCCCGTAGTGCCCAAATCGTGGCTTTGGCC AATGCGCTCGACCATTTGCGAGCACAACCAAGCAGCCTTAGCCCCAATCTGCAAGGCTTAATCGATCAAGCGATTGATCA CCATTGGGATTCAGCAGTGGCTGCGACGGCGCTTAGCGCTTGGCAGCAAACGAAGCTGGCTGAGGTTGGATAA
Upstream 100 bases:
>100_bases ATGACACACCAACTGCAAACCGCGCCACTCAACACCGCTTGGCAATGGGGCAACATCGAATCAAGCAAAGGGATGCTTTA ATTGAAGAGGAGAACGCGGC
Downstream 100 bases:
>100_bases GCGTCTCTTGCCATTCGGCAGCTTGTTGGCGCAAGCGACCACGCACCAAAGCCAAGGCATCAGCCGATTGATCTGCTGCA ATCCAGCATCGCCCTAGGCG
Product: metal dependent phosphohydrolase
Products: NA
Alternate protein names: Diguanylate Cyclase And Metal Dependent Phosphohydrolase; Response Regulator; Metal Dependent Phophohydrolase; HAMP Domain-Containing Cyclic Diguanylate Phosphodiesterase; Sensory Box Protein; Two-Component System Response Regulator; HD Domain Protein; Response Regulator Receiver Protein
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MDTTSFPEFWHSIPRDIAALMPNSPELPYDAHLILNSIARHSHELYQHSLRVGHMAWHMSHSLGVPTYERQQIWLAALLH DCGKTRMPRSLLFCPPPGSPHWEVALYQQHVNESLDVLHAYPTLHLLIPLVAEHHERIDGTGFPRGSKYPARSAQIVALA NALDHLRAQPSSLSPNLQGLIDQAIDHHWDSAVAATALSAWQQTKLAEVG
Sequences:
>Translated_210_residues MDTTSFPEFWHSIPRDIAALMPNSPELPYDAHLILNSIARHSHELYQHSLRVGHMAWHMSHSLGVPTYERQQIWLAALLH DCGKTRMPRSLLFCPPPGSPHWEVALYQQHVNESLDVLHAYPTLHLLIPLVAEHHERIDGTGFPRGSKYPARSAQIVALA NALDHLRAQPSSLSPNLQGLIDQAIDHHWDSAVAATALSAWQQTKLAEVG >Mature_210_residues MDTTSFPEFWHSIPRDIAALMPNSPELPYDAHLILNSIARHSHELYQHSLRVGHMAWHMSHSLGVPTYERQQIWLAALLH DCGKTRMPRSLLFCPPPGSPHWEVALYQQHVNESLDVLHAYPTLHLLIPLVAEHHERIDGTGFPRGSKYPARSAQIVALA NALDHLRAQPSSLSPNLQGLIDQAIDHHWDSAVAATALSAWQQTKLAEVG
Specific function: Unknown
COG id: COG2206
COG function: function code T; HD-GYP domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23528; Mature: 23528
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTTSFPEFWHSIPRDIAALMPNSPELPYDAHLILNSIARHSHELYQHSLRVGHMAWHMS CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HSLGVPTYERQQIWLAALLHDCGKTRMPRSLLFCPPPGSPHWEVALYQQHVNESLDVLHA HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH YPTLHLLIPLVAEHHERIDGTGFPRGSKYPARSAQIVALANALDHLRAQPSSLSPNLQGL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHH IDQAIDHHWDSAVAATALSAWQQTKLAEVG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDTTSFPEFWHSIPRDIAALMPNSPELPYDAHLILNSIARHSHELYQHSLRVGHMAWHMS CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HSLGVPTYERQQIWLAALLHDCGKTRMPRSLLFCPPPGSPHWEVALYQQHVNESLDVLHA HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH YPTLHLLIPLVAEHHERIDGTGFPRGSKYPARSAQIVALANALDHLRAQPSSLSPNLQGL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHH IDQAIDHHWDSAVAATALSAWQQTKLAEVG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA